Variant report

Variant	rs60610443
Chromosome Location	chr4:150746123-150746124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10003672	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018313	1.00[AMR][1000 genomes]
rs10022635	1.00[EUR][1000 genomes]
rs10023439	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10027531	1.00[AMR][1000 genomes]
rs10032726	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10033959	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331422	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331667	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12332005	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28418894	1.00[EUR][1000 genomes]
rs28422949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28461665	1.00[EUR][1000 genomes]
rs28463011	1.00[AMR][1000 genomes]
rs28505722	1.00[EUR][1000 genomes]
rs28542198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28582010	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626905	1.00[AMR][1000 genomes]
rs28636756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28710322	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28711701	1.00[EUR][1000 genomes]
rs28785307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58472290	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72728512	1.00[EUR][1000 genomes]
rs72963564	0.95[AFR][1000 genomes]
rs72963601	1.00[AMR][1000 genomes]
rs72963602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72965303	1.00[AMR][1000 genomes]
rs72965305	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72965316	1.00[EUR][1000 genomes]
rs7677694	1.00[AMR][1000 genomes]
rs9307861	1.00[AMR][1000 genomes]
rs9884130	1.00[AMR][1000 genomes]
rs9994620	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9998191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150744400-150747000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:150745000-150747000	Enhancers	NHDF-Ad	bronchial
3	chr4:150745200-150746600	Enhancers	HSMM	muscle
4	chr4:150745400-150746400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:150745400-150746400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:150745400-150746800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:150745400-150746800	Enhancers	HSMMtube	muscle
8	chr4:150745600-150746800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:150745800-150746200	Active TSS	Brain Germinal Matrix	brain
10	chr4:150745800-150752800	Weak transcription	Hela-S3	cervix
11	chr4:150746000-150747000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:150746000-150747000	Enhancers	HMEC	breast
13	chr4:150746000-150747200	Enhancers	NHEK	skin
14	chr4:150746000-150748600	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links