Variant report
| Variant | rs28505722 |
|---|---|
| Chromosome Location | chr4:150723631-150723632 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10003672 | 1.00[EUR][1000 genomes] |
| rs10022635 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10023439 | 1.00[EUR][1000 genomes] |
| rs10032726 | 1.00[EUR][1000 genomes] |
| rs10033959 | 1.00[EUR][1000 genomes] |
| rs12331422 | 1.00[EUR][1000 genomes] |
| rs12332005 | 1.00[EUR][1000 genomes] |
| rs28418894 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28422949 | 1.00[EUR][1000 genomes] |
| rs28461665 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28542198 | 1.00[EUR][1000 genomes] |
| rs28582010 | 1.00[EUR][1000 genomes] |
| rs28636756 | 1.00[EUR][1000 genomes] |
| rs28642159 | 0.86[AFR][1000 genomes] |
| rs28710322 | 1.00[EUR][1000 genomes] |
| rs28711701 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28785307 | 1.00[EUR][1000 genomes] |
| rs58472290 | 1.00[EUR][1000 genomes] |
| rs60610443 | 1.00[EUR][1000 genomes] |
| rs72728512 | 1.00[EUR][1000 genomes] |
| rs72963602 | 1.00[EUR][1000 genomes] |
| rs72965305 | 1.00[EUR][1000 genomes] |
| rs72965316 | 1.00[EUR][1000 genomes] |
| rs9994620 | 1.00[EUR][1000 genomes] |
| rs9998191 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1026797 | chr4:150246932-151217137 | Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016169 | chr4:150670127-150903827 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv537299 | chr4:150670127-150903827 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv880254 | chr4:150712923-150852782 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:150718000-150726400 | Weak transcription | Hela-S3 | cervix |
| 2 | chr4:150723400-150723800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
