Variant report

Variant	rs57565761
Chromosome Location	chr7:140240470-140240471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140233192..140234849-chr7:140239387..140241238,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10227869	1.00[EUR][1000 genomes]
rs11973083	1.00[EUR][1000 genomes]
rs11982424	1.00[EUR][1000 genomes]
rs11983453	1.00[EUR][1000 genomes]
rs269251	1.00[EUR][1000 genomes]
rs269252	1.00[EUR][1000 genomes]
rs269253	1.00[EUR][1000 genomes]
rs269260	1.00[EUR][1000 genomes]
rs55816014	1.00[EUR][1000 genomes]
rs56711326	1.00[EUR][1000 genomes]
rs57960333	1.00[EUR][1000 genomes]
rs58118476	1.00[EUR][1000 genomes]
rs59489402	1.00[EUR][1000 genomes]
rs60480710	1.00[EUR][1000 genomes]
rs60901124	1.00[EUR][1000 genomes]
rs61333130	1.00[EUR][1000 genomes]
rs61737088	1.00[EUR][1000 genomes]
rs61737090	1.00[EUR][1000 genomes]
rs6952059	1.00[EUR][1000 genomes]
rs6957365	1.00[EUR][1000 genomes]
rs6964971	1.00[EUR][1000 genomes]
rs6964982	1.00[EUR][1000 genomes]
rs6972562	1.00[EUR][1000 genomes]
rs6979290	1.00[EUR][1000 genomes]
rs73491595	1.00[EUR][1000 genomes]
rs73502154	1.00[EUR][1000 genomes]
rs73736617	1.00[EUR][1000 genomes]
rs73736622	1.00[EUR][1000 genomes]
rs73736632	1.00[EUR][1000 genomes]
rs73736633	1.00[EUR][1000 genomes]
rs7795017	1.00[EUR][1000 genomes]
rs7804236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1802929	chr7:140212566-140285491	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140207000-140241000	Weak transcription	Fetal Brain Male	brain
2	chr7:140218200-140241400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:140219200-140240800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:140219600-140240800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:140223400-140241000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:140223600-140240800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:140226000-140241000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:140226000-140241400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:140226000-140244000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:140226000-140244000	Weak transcription	Pancreas	Pancrea
11	chr7:140226200-140241000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:140226200-140262800	Weak transcription	Gastric	stomach
13	chr7:140226600-140241200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:140226600-140241400	Weak transcription	Fetal Intestine Large	intestine
15	chr7:140226800-140240800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:140227400-140241000	Weak transcription	Right Atrium	heart
17	chr7:140227600-140240800	Weak transcription	NH-A	brain
18	chr7:140227600-140243800	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:140228200-140244000	Weak transcription	Brain Substantia Nigra	brain
20	chr7:140229800-140241000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:140230400-140240800	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:140232200-140240800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:140233000-140240800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:140233600-140241000	Weak transcription	Left Ventricle	heart
25	chr7:140234600-140241800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr7:140235000-140244200	Weak transcription	Brain Angular Gyrus	brain
27	chr7:140235200-140240800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:140235200-140241000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:140235200-140241000	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:140235200-140241000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr7:140235200-140241800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:140235200-140241800	Weak transcription	Spleen	Spleen
33	chr7:140235400-140240800	Weak transcription	Ovary	ovary
34	chr7:140236200-140241200	Weak transcription	Esophagus	oesophagus
35	chr7:140237000-140240600	Strong transcription	NHDF-Ad	bronchial
36	chr7:140237600-140241000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:140237600-140243000	Genic enhancers	Fetal Stomach	stomach
38	chr7:140237800-140240800	Weak transcription	NHEK	skin
39	chr7:140238000-140241400	Strong transcription	Fetal Brain Female	brain
40	chr7:140238200-140241000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:140238200-140241200	Weak transcription	Colonic Mucosa	Colon
42	chr7:140238800-140241000	Strong transcription	Fetal Lung	lung
43	chr7:140238800-140241400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:140238800-140242400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:140239000-140241600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr7:140239000-140242800	Genic enhancers	Fetal Muscle Trunk	muscle
47	chr7:140239000-140243400	Genic enhancers	Fetal Muscle Leg	muscle
48	chr7:140239400-140241200	Enhancers	H1 Cell Line	embryonic stem cell
49	chr7:140239400-140243000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:140239600-140241000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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