Variant report

Variant	rs73502154
Chromosome Location	chr7:140266877-140266878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10227869	1.00[EUR][1000 genomes]
rs11973083	1.00[EUR][1000 genomes]
rs11982424	1.00[EUR][1000 genomes]
rs11983453	1.00[EUR][1000 genomes]
rs1568640	1.00[AMR][1000 genomes]
rs269251	1.00[EUR][1000 genomes]
rs269252	1.00[EUR][1000 genomes]
rs269253	1.00[EUR][1000 genomes]
rs269260	1.00[EUR][1000 genomes]
rs55816014	1.00[EUR][1000 genomes]
rs56711326	1.00[EUR][1000 genomes]
rs57565761	1.00[EUR][1000 genomes]
rs57960333	1.00[EUR][1000 genomes]
rs58118476	1.00[EUR][1000 genomes]
rs58620263	1.00[AMR][1000 genomes]
rs59489402	1.00[EUR][1000 genomes]
rs60480710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60847193	1.00[AMR][1000 genomes]
rs60901124	1.00[EUR][1000 genomes]
rs61333130	1.00[EUR][1000 genomes]
rs61737088	1.00[EUR][1000 genomes]
rs61737090	1.00[EUR][1000 genomes]
rs6952059	1.00[EUR][1000 genomes]
rs6957365	1.00[EUR][1000 genomes]
rs6964971	1.00[EUR][1000 genomes]
rs6964982	1.00[EUR][1000 genomes]
rs6972562	1.00[EUR][1000 genomes]
rs6979290	1.00[EUR][1000 genomes]
rs73483934	1.00[AMR][1000 genomes]
rs73483942	1.00[AMR][1000 genomes]
rs73491542	1.00[AMR][1000 genomes]
rs73491552	1.00[AMR][1000 genomes]
rs73491556	1.00[AMR][1000 genomes]
rs73491570	1.00[AMR][1000 genomes]
rs73491576	1.00[AMR][1000 genomes]
rs73491591	1.00[AMR][1000 genomes]
rs73491595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73500429	1.00[AMR][1000 genomes]
rs73736617	1.00[EUR][1000 genomes]
rs73736622	1.00[EUR][1000 genomes]
rs73736632	1.00[EUR][1000 genomes]
rs73736633	1.00[EUR][1000 genomes]
rs7795017	1.00[EUR][1000 genomes]
rs7804236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802929	chr7:140212566-140285491	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140242000-140268000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:140247000-140276400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:140247000-140297400	Weak transcription	Spleen	Spleen
4	chr7:140255200-140267000	Strong transcription	Fetal Muscle Trunk	muscle
5	chr7:140258200-140267400	Weak transcription	Brain Angular Gyrus	brain
6	chr7:140259600-140268200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:140259800-140267400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:140260200-140273400	Weak transcription	Fetal Brain Male	brain
9	chr7:140261800-140284000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:140262600-140267800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:140263000-140268600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:140263400-140267000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:140263400-140278400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:140263800-140270400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:140263800-140274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:140263800-140276000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:140263800-140277800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:140263800-140286800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:140263800-140303600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr7:140263800-140303600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:140263800-140305200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:140263800-140305600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:140264000-140269600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:140264000-140272800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:140264600-140268400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:140264600-140290400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:140265000-140267200	Strong transcription	Brain Germinal Matrix	brain
28	chr7:140265000-140267400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:140265000-140267400	Weak transcription	Gastric	stomach
30	chr7:140265200-140267000	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:140265200-140267200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:140265200-140271400	Weak transcription	Fetal Kidney	kidney
33	chr7:140265200-140272800	Weak transcription	Brain Substantia Nigra	brain
34	chr7:140265200-140304400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:140265400-140271400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:140265800-140267600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:140265800-140268400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:140265800-140274000	Strong transcription	Fetal Brain Female	brain
39	chr7:140266000-140267000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:140266000-140267600	Enhancers	NHDF-Ad	bronchial
41	chr7:140266000-140267800	Enhancers	NH-A	brain
42	chr7:140266200-140267000	Enhancers	Esophagus	oesophagus
43	chr7:140266200-140267000	Genic enhancers	Fetal Lung	lung
44	chr7:140266200-140267400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:140266200-140267600	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr7:140266200-140267600	Enhancers	HMEC	breast
47	chr7:140266200-140267600	Enhancers	Osteobl	bone
48	chr7:140266200-140267800	Genic enhancers	Fetal Stomach	stomach
49	chr7:140266200-140267800	Enhancers	Ovary	ovary
50	chr7:140266200-140267800	Enhancers	Stomach Smooth Muscle	stomach

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