Variant report

Variant	rs61737088
Chromosome Location	chr7:140221878-140221879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140221603..140223913-chr7:140237034..140239122,2	K562	blood:
2	chr7:140220132..140222856-chr7:140372163..140374665,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133597	Chromatin interaction
ENSG00000146966	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10227869	1.00[EUR][1000 genomes]
rs11973083	1.00[EUR][1000 genomes]
rs11982424	1.00[EUR][1000 genomes]
rs11983453	1.00[EUR][1000 genomes]
rs269251	1.00[EUR][1000 genomes]
rs269252	1.00[EUR][1000 genomes]
rs269253	1.00[EUR][1000 genomes]
rs269260	1.00[EUR][1000 genomes]
rs55816014	1.00[EUR][1000 genomes]
rs56711326	1.00[EUR][1000 genomes]
rs57565761	1.00[EUR][1000 genomes]
rs57960333	1.00[EUR][1000 genomes]
rs58118476	1.00[EUR][1000 genomes]
rs59489402	1.00[EUR][1000 genomes]
rs60480710	1.00[EUR][1000 genomes]
rs60901124	1.00[EUR][1000 genomes]
rs61333130	1.00[EUR][1000 genomes]
rs61737090	1.00[EUR][1000 genomes]
rs6952059	1.00[EUR][1000 genomes]
rs6957365	1.00[EUR][1000 genomes]
rs6964971	1.00[EUR][1000 genomes]
rs6964982	1.00[EUR][1000 genomes]
rs6972562	1.00[EUR][1000 genomes]
rs6979290	1.00[EUR][1000 genomes]
rs73491595	1.00[EUR][1000 genomes]
rs73502154	1.00[EUR][1000 genomes]
rs73736617	1.00[EUR][1000 genomes]
rs73736622	1.00[EUR][1000 genomes]
rs73736632	1.00[EUR][1000 genomes]
rs73736633	1.00[EUR][1000 genomes]
rs7795017	1.00[EUR][1000 genomes]
rs7804236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2761112	chr7:140191538-140234571	Strong transcription Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv464735	chr7:140195463-140233585	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv608501	chr7:140195463-140233585	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1033685	chr7:140197079-140224303	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv1015856	chr7:140197079-140235677	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv1018535	chr7:140198540-140224303	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv1019815	chr7:140206590-140235677	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv1802929	chr7:140212566-140285491	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140205800-140225400	Weak transcription	Spleen	Spleen
2	chr7:140206800-140233200	Weak transcription	Brain Angular Gyrus	brain
3	chr7:140207000-140241000	Weak transcription	Fetal Brain Male	brain
4	chr7:140211600-140225600	Weak transcription	NH-A	brain
5	chr7:140212600-140225400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:140212600-140225400	Weak transcription	Esophagus	oesophagus
7	chr7:140212600-140225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:140212600-140225800	Weak transcription	Right Atrium	heart
9	chr7:140212600-140227000	Weak transcription	Lung	lung
10	chr7:140212800-140224000	Weak transcription	Liver	Liver
11	chr7:140214600-140225400	Weak transcription	Gastric	stomach
12	chr7:140216600-140227600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:140216800-140229000	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:140216800-140230600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:140217200-140223400	Strong transcription	Fetal Intestine Small	intestine
16	chr7:140217200-140224000	Strong transcription	Fetal Brain Female	brain
17	chr7:140217400-140222000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:140218000-140223400	Weak transcription	Fetal Intestine Large	intestine
19	chr7:140218200-140223800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr7:140218200-140224800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:140218200-140225400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:140218200-140225600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:140218200-140225800	Weak transcription	Pancreas	Pancrea
24	chr7:140218200-140241400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr7:140218400-140225000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:140218400-140225600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:140218600-140222200	Strong transcription	Brain Germinal Matrix	brain
28	chr7:140219000-140226800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:140219000-140233200	Weak transcription	NHDF-Ad	bronchial
30	chr7:140219200-140222800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:140219200-140223000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr7:140219200-140225800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:140219200-140226600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:140219200-140240800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr7:140219400-140222000	Weak transcription	Small Intestine	intestine
36	chr7:140219400-140223600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:140219400-140225600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr7:140219400-140229000	Strong transcription	Fetal Stomach	stomach
39	chr7:140219600-140223000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr7:140219600-140223200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:140219600-140225400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:140219600-140225400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:140219600-140225400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr7:140219600-140225400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:140219600-140225600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr7:140219600-140240800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:140219800-140223800	Strong transcription	Adipose Nuclei	Adipose
48	chr7:140219800-140225400	Weak transcription	Brain Substantia Nigra	brain
49	chr7:140219800-140233200	Strong transcription	Fetal Muscle Leg	muscle
50	chr7:140220000-140222200	Strong transcription	Brain Anterior Caudate	brain

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