Variant report

Variant	rs57590386
Chromosome Location	chr10:26120435-26120436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16926381	0.81[AFR][1000 genomes]
rs16926389	0.81[AFR][1000 genomes]
rs16926394	0.81[AFR][1000 genomes]
rs1865628	0.81[AFR][1000 genomes]
rs1865629	0.81[AFR][1000 genomes]
rs1865630	0.81[AFR][1000 genomes]
rs74125945	0.81[AFR][1000 genomes]
rs74125947	0.81[AFR][1000 genomes]
rs74125951	0.81[AFR][1000 genomes]
rs74125988	0.81[AFR][1000 genomes]
rs751004	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26117000-26120800	Enhancers	Brain Germinal Matrix	brain
2	chr10:26118400-26120600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr10:26118800-26122400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:26119800-26121200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:26120000-26120600	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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