Variant report

Variant	rs16926389
Chromosome Location	chr10:26118292-26118293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16926381	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926390	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926392	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926397	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926403	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926405	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926406	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926412	1.00[AMR][1000 genomes]
rs1865628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865629	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865630	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865631	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57032537	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57590386	0.81[AFR][1000 genomes]
rs60178345	1.00[AMR][1000 genomes]
rs74125945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125946	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125948	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125952	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125990	1.00[AMR][1000 genomes]
rs74125992	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125993	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125994	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125995	1.00[AMR][1000 genomes]
rs74128726	1.00[AMR][1000 genomes]
rs751004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26110400-26118800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:26117000-26120800	Enhancers	Brain Germinal Matrix	brain
3	chr10:26117800-26119800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:26118000-26119000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:26118000-26119200	Weak transcription	Fetal Kidney	kidney
6	chr10:26118200-26118400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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