Variant report

Variant	rs16926392
Chromosome Location	chr10:26120939-26120940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16926381	0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926389	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926394	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926403	1.00[AMR][1000 genomes]
rs16926405	1.00[AMR][1000 genomes]
rs16926406	1.00[AMR][1000 genomes]
rs16926412	1.00[AMR][1000 genomes]
rs1865628	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865629	0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865630	0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865631	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2505436	0.91[AFR][1000 genomes]
rs57032537	1.00[AMR][1000 genomes]
rs60178345	1.00[AMR][1000 genomes]
rs74125945	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125947	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125951	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125988	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125990	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125992	1.00[AMR][1000 genomes]
rs74125993	1.00[AMR][1000 genomes]
rs74125994	1.00[AMR][1000 genomes]
rs74125995	1.00[AMR][1000 genomes]
rs74128726	1.00[AMR][1000 genomes]
rs751004	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26118800-26122400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:26119800-26121200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:26120600-26121000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:26120800-26122200	Weak transcription	Fetal Kidney	kidney
5	chr10:26120800-26125200	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links