Variant report

Variant	rs1865631
Chromosome Location	chr10:26109675-26109676
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:26109191-26110284	H1-neurons	neurons:	n/a	n/a
2	REST	chr10:26107255-26110438	H1-neurons	neurons:	n/a	chr10:26110023-26110041
3	POLR2A	chr10:26109192-26110336	H1-neurons	neurons:	n/a	n/a
4	REST	chr10:26109181-26110275	H1-neurons	neurons:	n/a	chr10:26110023-26110041

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26109191..26112168-chr10:26115636..26117848,2	K562	blood:

Variant related genes	Relation type
RNU6-632P	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16926381	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926389	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926394	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926403	1.00[AMR][1000 genomes]
rs16926405	1.00[AMR][1000 genomes]
rs16926406	1.00[AMR][1000 genomes]
rs16926412	1.00[AMR][1000 genomes]
rs1865628	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865629	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865630	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2505436	0.91[AFR][1000 genomes]
rs57032537	1.00[AMR][1000 genomes]
rs60178345	1.00[AMR][1000 genomes]
rs74125945	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125947	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125951	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125988	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125990	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125992	1.00[AMR][1000 genomes]
rs74125993	1.00[AMR][1000 genomes]
rs74125994	1.00[AMR][1000 genomes]
rs74125995	1.00[AMR][1000 genomes]
rs74128726	1.00[AMR][1000 genomes]
rs751004	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26106200-26116400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26107000-26109800	Weak transcription	NH-A	brain
3	chr10:26107400-26117200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:26108400-26109800	Weak transcription	Dnd41	blood
5	chr10:26108400-26110000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:26108400-26117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:26108400-26117200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:26108400-26117600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:26109400-26109800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:26109400-26109800	Weak transcription	Brain Germinal Matrix	brain
11	chr10:26109400-26110400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:26109400-26110400	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:26109400-26110400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr10:26109600-26109800	Enhancers	Primary B cells from cord blood	blood
15	chr10:26109600-26109800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:26109600-26109800	Enhancers	Adipose Nuclei	Adipose
17	chr10:26109600-26109800	Enhancers	Brain Hippocampus Middle	brain
18	chr10:26109600-26110000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr10:26109600-26110200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:26109600-26110200	Active TSS	Monocytes-CD14+_RO01746	blood

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