Variant report

Variant	rs74125949
Chromosome Location	chr10:26117039-26117040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16926381	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926389	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926394	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926403	1.00[AMR][1000 genomes]
rs16926405	1.00[AMR][1000 genomes]
rs16926406	1.00[AMR][1000 genomes]
rs16926412	1.00[AMR][1000 genomes]
rs1865628	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865630	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2505436	0.91[AFR][1000 genomes]
rs57032537	1.00[AMR][1000 genomes]
rs60178345	1.00[AMR][1000 genomes]
rs74125945	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125947	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125951	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125988	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125990	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125992	1.00[AMR][1000 genomes]
rs74125993	1.00[AMR][1000 genomes]
rs74125994	1.00[AMR][1000 genomes]
rs74125995	1.00[AMR][1000 genomes]
rs74128726	1.00[AMR][1000 genomes]
rs751004	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26107400-26117200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:26108400-26117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:26108400-26117200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:26108400-26117600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:26110400-26118800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:26117000-26117400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:26117000-26117600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:26117000-26117800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:26117000-26120800	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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