Variant report

Variant	rs16926406
Chromosome Location	chr10:26140122-26140123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26133253..26135370-chr10:26139828..26141918,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11014780	0.85[AFR][1000 genomes]
rs16926381	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926389	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926390	1.00[AMR][1000 genomes]
rs16926392	1.00[AMR][1000 genomes]
rs16926394	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926397	1.00[AMR][1000 genomes]
rs16926403	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926412	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926422	0.85[AFR][1000 genomes]
rs1865628	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865629	0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865630	0.86[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865631	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs57032537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60178345	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125945	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125946	1.00[AMR][1000 genomes]
rs74125947	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125948	1.00[AMR][1000 genomes]
rs74125949	1.00[AMR][1000 genomes]
rs74125951	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125952	1.00[AMR][1000 genomes]
rs74125988	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125990	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125993	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125995	1.00[AMR][1000 genomes]
rs74128726	1.00[AMR][1000 genomes]
rs751004	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3411313	chr10:26139815-26143622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3482285	chr10:26139862-26143599	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3323523	chr10:26139880-26143583	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3482396	chr10:26139901-26143556	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3482507	chr10:26139901-26143556	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv11326	chr10:26139994-26143360	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26138000-26141400	Enhancers	Brain Germinal Matrix	brain
2	chr10:26138000-26142200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:26138600-26141600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26138800-26141600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:26138800-26141800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:26138800-26142000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:26138800-26142000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:26139400-26140400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:26139400-26140600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:26139600-26140600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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