Variant report

Variant	rs1865628
Chromosome Location	chr10:26106207-26106208
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:26104611-26107014	H1-neurons	neurons:	n/a	chr10:26106907-26106925
2	POLR2A	chr10:26106129-26106523	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26104636..26107048-chr17:79824825..79827095,2	MCF-7	breast:

Variant related genes	Relation type
RNA5SP306	TF binding region
ENSG00000262413	Chromatin interaction
ENSG00000141522	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16926381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926390	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926392	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926397	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926403	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926405	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926406	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926412	1.00[AMR][1000 genomes]
rs1865629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865631	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57032537	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57590386	0.81[AFR][1000 genomes]
rs60178345	1.00[AMR][1000 genomes]
rs74125945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125946	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125948	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125952	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125990	1.00[AMR][1000 genomes]
rs74125992	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125993	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125994	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125995	1.00[AMR][1000 genomes]
rs74128726	1.00[AMR][1000 genomes]
rs751004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26088200-26106600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:26103800-26108400	Enhancers	Dnd41	blood
3	chr10:26104600-26107200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr10:26104600-26108000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:26104800-26108400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:26105000-26107000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:26105000-26108000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:26105200-26108400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:26105400-26106600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:26105600-26106800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:26105600-26107000	Enhancers	NH-A	brain
12	chr10:26105800-26107200	Enhancers	Brain Germinal Matrix	brain
13	chr10:26106200-26106400	Enhancers	Brain Anterior Caudate	brain
14	chr10:26106200-26106600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:26106200-26107400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr10:26106200-26108400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr10:26106200-26116400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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