Variant report

Variant	rs60178345
Chromosome Location	chr10:26142960-26142961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10828886	0.91[AFR][1000 genomes]
rs11014781	0.91[AFR][1000 genomes]
rs16926381	1.00[AMR][1000 genomes]
rs16926389	1.00[AMR][1000 genomes]
rs16926390	1.00[AMR][1000 genomes]
rs16926392	1.00[AMR][1000 genomes]
rs16926394	1.00[AMR][1000 genomes]
rs16926397	1.00[AMR][1000 genomes]
rs16926403	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926405	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926406	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926412	1.00[AMR][1000 genomes]
rs1865628	1.00[AMR][1000 genomes]
rs1865629	1.00[AMR][1000 genomes]
rs1865630	1.00[AMR][1000 genomes]
rs1865631	1.00[AMR][1000 genomes]
rs57032537	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125945	1.00[AMR][1000 genomes]
rs74125946	1.00[AMR][1000 genomes]
rs74125947	1.00[AMR][1000 genomes]
rs74125948	1.00[AMR][1000 genomes]
rs74125949	1.00[AMR][1000 genomes]
rs74125951	1.00[AMR][1000 genomes]
rs74125952	1.00[AMR][1000 genomes]
rs74125988	1.00[AMR][1000 genomes]
rs74125990	1.00[AMR][1000 genomes]
rs74125992	1.00[AMR][1000 genomes]
rs74125993	1.00[AMR][1000 genomes]
rs74125994	1.00[AMR][1000 genomes]
rs74125995	1.00[AMR][1000 genomes]
rs74128726	1.00[AMR][1000 genomes]
rs751004	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3411313	chr10:26139815-26143622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3482285	chr10:26139862-26143599	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3323523	chr10:26139880-26143583	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3482396	chr10:26139901-26143556	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3482507	chr10:26139901-26143556	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv11326	chr10:26139994-26143360	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26141400-26144000	Weak transcription	Brain Germinal Matrix	brain
2	chr10:26141600-26144400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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