Variant report

Variant	rs57600452
Chromosome Location	chr14:40005049-40005050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs17109174	0.81[AFR][1000 genomes]
rs17109188	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109213	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109227	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109249	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109258	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109293	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109318	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109331	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56859252	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57012657	1.00[AMR][1000 genomes]
rs57430547	1.00[AMR][1000 genomes]
rs57569191	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58889517	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59546917	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59597680	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59741982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59788308	1.00[AMR][1000 genomes]
rs60601774	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60921042	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61176483	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61668966	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279309	1.00[AMR][1000 genomes]
rs73279392	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281120	1.00[AMR][1000 genomes]
rs73283432	1.00[AMR][1000 genomes]
rs73283442	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285541	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285564	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285569	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285591	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285598	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285599	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287518	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287521	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287541	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287554	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287555	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287560	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287572	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287574	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287602	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291685	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293637	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv456212	chr14:39957437-40096888	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv564418	chr14:39957437-40096888	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40004000-40005600	Weak transcription	Ovary	ovary
2	chr14:40004200-40007000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:40004800-40006800	Weak transcription	Right Ventricle	heart

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