Variant report

Variant	rs73281120
Chromosome Location	chr14:40090626-40090627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17109213	1.00[AMR][1000 genomes]
rs17109227	1.00[AMR][1000 genomes]
rs17109249	1.00[AMR][1000 genomes]
rs17109258	1.00[AMR][1000 genomes]
rs17109293	1.00[AMR][1000 genomes]
rs17109318	1.00[AMR][1000 genomes]
rs17109331	1.00[AMR][1000 genomes]
rs57012657	1.00[AMR][1000 genomes]
rs57430547	1.00[AMR][1000 genomes]
rs57569191	1.00[AMR][1000 genomes]
rs57600452	1.00[AMR][1000 genomes]
rs58889517	1.00[AMR][1000 genomes]
rs59546917	1.00[AMR][1000 genomes]
rs59597680	1.00[AMR][1000 genomes]
rs59741982	1.00[AMR][1000 genomes]
rs59788308	1.00[AMR][1000 genomes]
rs60601774	1.00[AMR][1000 genomes]
rs73285591	1.00[AMR][1000 genomes]
rs73285598	1.00[AMR][1000 genomes]
rs73285599	1.00[AMR][1000 genomes]
rs73287518	1.00[AMR][1000 genomes]
rs73287521	1.00[AMR][1000 genomes]
rs73287541	1.00[AMR][1000 genomes]
rs73287554	1.00[AMR][1000 genomes]
rs73287555	1.00[AMR][1000 genomes]
rs73287560	1.00[AMR][1000 genomes]
rs73287572	1.00[AMR][1000 genomes]
rs73287574	1.00[AMR][1000 genomes]
rs73287602	1.00[AMR][1000 genomes]
rs73291685	1.00[AMR][1000 genomes]
rs73293637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv456212	chr14:39957437-40096888	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv564418	chr14:39957437-40096888	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv901658	chr14:40026898-40096888	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv832775	chr14:40038735-40193559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv977585	chr14:40075682-40102272	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40088600-40091200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr14:40089200-40094000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:40090400-40091400	Enhancers	Primary T cells from cord blood	blood
4	chr14:40090600-40091200	Enhancers	Psoas Muscle	Psoas

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