Variant report

Variant	rs73287541
Chromosome Location	chr14:39916154-39916155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39904079..39906204-chr14:39915198..39917525,2	MCF-7	breast:
2	chr14:39901571..39903838-chr14:39915364..39917054,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165355	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs17109174	1.00[AFR][1000 genomes]
rs17109188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109331	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34909359	1.00[AMR][1000 genomes]
rs56859252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57012657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57430547	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57569191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57600452	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58889517	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59546917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59597680	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59741982	1.00[AMR][1000 genomes]
rs59788308	1.00[AMR][1000 genomes]
rs60367463	1.00[AMR][1000 genomes]
rs60601774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60921042	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61176483	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61549948	1.00[AMR][1000 genomes]
rs61668966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277428	1.00[AMR][1000 genomes]
rs73277432	1.00[AMR][1000 genomes]
rs73277440	1.00[AMR][1000 genomes]
rs73277451	1.00[AMR][1000 genomes]
rs73277466	1.00[AMR][1000 genomes]
rs73277467	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277471	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277473	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277474	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277475	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277478	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277496	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277499	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277501	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279309	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279392	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281120	1.00[AMR][1000 genomes]
rs73283432	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283442	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283453	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287521	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287555	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293637	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39903000-39916400	Weak transcription	Fetal Heart	heart
2	chr14:39911600-39918000	Weak transcription	Gastric	stomach
3	chr14:39911800-39916400	Weak transcription	Lung	lung
4	chr14:39915000-39916800	Flanking Active TSS	GM12878-XiMat	blood
5	chr14:39915000-39918200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr14:39915400-39916800	Enhancers	Hela-S3	cervix

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