Variant report

Variant	rs5762686
Chromosome Location	chr22:28954388-28954389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28951733..28954395-chr22:28960570..28962204,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10427676	0.92[AFR][1000 genomes]
rs10460754	0.83[ASN][1000 genomes]
rs134527	0.84[JPT][hapmap]
rs134544	0.89[JPT][hapmap]
rs17412920	1.00[ASW][hapmap];0.84[CEU][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.96[MKK][hapmap];0.81[TSI][hapmap];0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17504822	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2346395	1.00[ASW][hapmap];0.92[MEX][hapmap]
rs5752729	0.84[CEU][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes]
rs5752746	0.89[JPT][hapmap]
rs5752766	0.85[ASN][1000 genomes]
rs5762572	0.92[AFR][1000 genomes]
rs5762604	0.81[ASN][1000 genomes]
rs5762622	0.84[CEU][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs5762654	0.84[CEU][hapmap];0.89[JPT][hapmap];0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs5762656	1.00[ASW][hapmap];0.84[CEU][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.96[MKK][hapmap];0.84[TSI][hapmap];0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs5762659	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs5762666	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs5762736	1.00[ASW][hapmap];0.88[CEU][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];0.80[MEX][hapmap];0.96[MKK][hapmap];0.84[TSI][hapmap];0.88[ASN][1000 genomes]
rs5762758	1.00[ASW][hapmap]
rs5762763	1.00[ASW][hapmap];0.93[MKK][hapmap]
rs7286920	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7288416	1.00[ASW][hapmap];0.84[CEU][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.96[MKK][hapmap];0.84[TSI][hapmap];0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73168176	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9306458	0.82[CEU][hapmap];0.89[JPT][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9608692	0.91[ASN][1000 genomes]
rs9613617	0.80[CEU][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.81[ASN][1000 genomes]
rs9613630	1.00[ASW][hapmap];0.84[CEU][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.96[MKK][hapmap];0.84[TSI][hapmap];0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9613639	0.88[ASN][1000 genomes]
rs9613658	0.84[CEU][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28944600-28956000	Weak transcription	NHDF-Ad	bronchial

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