Variant report

Variant	rs73168176
Chromosome Location	chr22:28818863-28818864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10427676	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs134544	0.97[ASN][1000 genomes]
rs17412920	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17504822	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5752728	0.95[ASN][1000 genomes]
rs5752729	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5752746	0.95[ASN][1000 genomes]
rs5752766	0.90[EUR][1000 genomes]
rs5762572	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5762604	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5762622	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5762654	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5762656	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5762659	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5762666	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5762686	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs5762736	0.91[EUR][1000 genomes]
rs7286920	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7288416	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9306455	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9306458	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9608692	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9613609	0.97[ASN][1000 genomes]
rs9613617	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9613630	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9613639	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9613658	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28793000-28819800	Weak transcription	Fetal Intestine Small	intestine
2	chr22:28798800-28821200	Weak transcription	Dnd41	blood
3	chr22:28807400-28821200	Weak transcription	Hela-S3	cervix
4	chr22:28808400-28821400	Weak transcription	Gastric	stomach
5	chr22:28808400-28821800	Weak transcription	Psoas Muscle	Psoas
6	chr22:28810600-28821800	Weak transcription	Adipose Nuclei	Adipose
7	chr22:28811000-28821600	Weak transcription	Pancreas	Pancrea
8	chr22:28816000-28820600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr22:28816200-28820000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr22:28816200-28820200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr22:28816200-28820400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr22:28816200-28820600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr22:28816200-28826400	Weak transcription	Stomach Mucosa	stomach
14	chr22:28816400-28819600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr22:28816400-28820600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr22:28816400-28820600	Weak transcription	Fetal Brain Female	brain
17	chr22:28816400-28820600	Weak transcription	Fetal Lung	lung
18	chr22:28816600-28820600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr22:28816800-28819000	Weak transcription	Ovary	ovary
20	chr22:28817400-28819600	Weak transcription	Brain Germinal Matrix	brain
21	chr22:28818000-28825200	Weak transcription	Fetal Brain Male	brain
22	chr22:28818200-28819600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr22:28818200-28820600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links