Variant report

Variant	rs9306455
Chromosome Location	chr22:28767637-28767638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10427676	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs134544	0.84[ASN][1000 genomes]
rs17412920	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17504822	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5752728	0.83[ASN][1000 genomes]
rs5752729	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5752746	0.80[ASN][1000 genomes]
rs5762572	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5762604	0.84[ASN][1000 genomes]
rs5762622	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5762654	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5762656	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5762659	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5762666	0.82[EUR][1000 genomes]
rs5762736	0.80[EUR][1000 genomes]
rs7286920	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7288416	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73168176	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs738199	0.86[AMR][1000 genomes]
rs738995	0.83[EUR][1000 genomes]
rs9306454	0.83[EUR][1000 genomes]
rs9306458	0.83[EUR][1000 genomes]
rs9613609	0.84[ASN][1000 genomes]
rs9613617	0.80[ASN][1000 genomes]
rs9613630	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9613639	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9613658	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28752800-28768600	Weak transcription	Left Ventricle	heart
2	chr22:28759800-28777200	Weak transcription	Fetal Stomach	stomach
3	chr22:28760000-28771800	Weak transcription	Right Ventricle	heart
4	chr22:28760200-28768800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:28766200-28768600	Weak transcription	Ovary	ovary
6	chr22:28766200-28768800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr22:28766200-28769400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr22:28766200-28772000	Weak transcription	Lung	lung
9	chr22:28766400-28768600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr22:28766400-28768800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr22:28766400-28769400	Weak transcription	HSMMtube	muscle
12	chr22:28766400-28769600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr22:28766400-28769600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr22:28766400-28769600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr22:28766400-28769800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr22:28766400-28769800	Weak transcription	Stomach Mucosa	stomach
17	chr22:28766400-28770000	Weak transcription	Fetal Intestine Small	intestine
18	chr22:28766400-28771600	Weak transcription	Psoas Muscle	Psoas
19	chr22:28766600-28769400	Weak transcription	Primary T cells from cord blood	blood
20	chr22:28767000-28769000	Weak transcription	Fetal Heart	heart
21	chr22:28767000-28771600	Weak transcription	Spleen	Spleen
22	chr22:28767200-28771600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr22:28767400-28770000	Weak transcription	Dnd41	blood

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