Variant report

Variant	rs10427676
Chromosome Location	chr22:28773326-28773327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs134544	0.96[ASN][1000 genomes]
rs17412920	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17504822	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5752728	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5752729	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5752746	0.93[ASN][1000 genomes]
rs5762572	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5762604	0.96[ASN][1000 genomes]
rs5762622	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5762654	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5762656	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5762659	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5762666	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5762686	0.92[AFR][1000 genomes]
rs7286920	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7288416	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73168176	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs738995	0.85[EUR][1000 genomes]
rs9306454	0.83[EUR][1000 genomes]
rs9306455	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9306458	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9608692	0.85[AFR][1000 genomes]
rs9613609	0.96[ASN][1000 genomes]
rs9613617	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9613630	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9613639	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28759800-28777200	Weak transcription	Fetal Stomach	stomach
2	chr22:28770000-28777400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr22:28770200-28774800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr22:28770200-28775000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr22:28770200-28775800	Weak transcription	Fetal Brain Female	brain
6	chr22:28770200-28777200	Weak transcription	Colon Smooth Muscle	Colon
7	chr22:28770400-28775800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr22:28770400-28777000	Weak transcription	NHLF	lung
9	chr22:28770600-28774400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr22:28771400-28773600	Enhancers	Fetal Lung	lung
11	chr22:28772000-28775200	Weak transcription	Dnd41	blood
12	chr22:28772000-28777200	Weak transcription	Ovary	ovary
13	chr22:28772200-28774000	Weak transcription	Fetal Intestine Small	intestine
14	chr22:28772200-28774400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr22:28772400-28777000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr22:28772400-28777200	Weak transcription	NHDF-Ad	bronchial
17	chr22:28772800-28774400	Weak transcription	Lung	lung
18	chr22:28772800-28775000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr22:28772800-28775000	Weak transcription	Liver	Liver
20	chr22:28772800-28775200	Weak transcription	Adipose Nuclei	Adipose
21	chr22:28772800-28775400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr22:28772800-28777000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr22:28772800-28777000	Weak transcription	Osteobl	bone
24	chr22:28773000-28774600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr22:28773000-28775800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr22:28773000-28777200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr22:28773200-28777600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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