Variant report

Variant	rs57648561
Chromosome Location	chr15:58702763-58702764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CCNT2	chr15:58702660-58702860	K562	blood:	n/a	n/a
2	MXI1	chr15:58702675-58702949	GM12878	blood:	n/a	n/a
3	EP300	chr15:58702670-58702821	GM12878	blood:	n/a	n/a
4	JUND	chr15:58702143-58702857	K562	blood:	n/a	n/a
5	POLR2A	chr15:58702466-58702994	GM12878	blood:	n/a	n/a
6	STAT3	chr15:58702539-58702872	GM12878	blood:	n/a	chr15:58702747-58702758
7	PAX5	chr15:58702455-58702975	GM12878	blood:	n/a	chr15:58702708-58702717
8	SPI1	chr15:58702607-58702807	K562	blood:	n/a	n/a
9	IRF1	chr15:58702434-58702931	K562	blood:	n/a	chr15:58702747-58702759 chr15:58702748-58702762 chr15:58702748-58702758 chr15:58702745-58702759 chr15:58702746-58702760 chr15:58702529-58702543 chr15:58702744-58702758 chr15:58702707-58702716 chr15:58702745-58702759 chr15:58702747-58702760 chr15:58702746-58702757 chr15:58702747-58702758
10	POLR2A	chr15:58702506-58702844	GM12891	blood:	n/a	n/a
11	UBTF	chr15:58702722-58702905	K562	blood:	n/a	n/a
12	MAX	chr15:58702596-58702889	GM12878	blood:	n/a	n/a
13	RCOR1	chr15:58702641-58702820	GM12878	blood:	n/a	n/a
14	PAX5	chr15:58702497-58702852	GM12878	blood:	n/a	chr15:58702708-58702717
15	IRF1	chr15:58702541-58702887	K562	blood:	n/a	chr15:58702747-58702759 chr15:58702748-58702762 chr15:58702748-58702758 chr15:58702745-58702759 chr15:58702746-58702760 chr15:58702744-58702758 chr15:58702707-58702716 chr15:58702745-58702759 chr15:58702747-58702760 chr15:58702746-58702757 chr15:58702747-58702758
16	TBP	chr15:58702425-58702967	GM12878	blood:	n/a	n/a
17	POLR2A	chr15:58702448-58702946	U87	brain:	n/a	n/a
18	RCOR1	chr15:58702006-58702947	K562	blood:	n/a	n/a
19	ELF1	chr15:58702483-58702930	GM12878	blood:	n/a	chr15:58702703-58702714 chr15:58702701-58702714
20	TAF1	chr15:58702663-58702836	GM12891	blood:	n/a	n/a
21	POLR2A	chr15:58702497-58702946	U87	brain:	n/a	n/a
22	HCFC1	chr15:58702603-58702791	K562	blood:	n/a	n/a
23	POLR2A	chr15:58702384-58702894	GM12878	blood:	n/a	n/a
24	ZNF384	chr15:58702759-58702876	GM12878	blood:	n/a	n/a
25	WRNIP1	chr15:58702535-58702918	GM12878	blood:	n/a	n/a
26	YY1	chr15:58702711-58702971	GM12878	blood:	n/a	n/a
27	PAX5	chr15:58702506-58702879	GM12878	blood:	n/a	chr15:58702708-58702717
28	MAFK	chr15:58702690-58703053	K562	blood:	n/a	chr15:58703002-58703013 chr15:58703001-58703012 chr15:58703001-58703012 chr15:58703002-58703013
29	SMC3	chr15:58702535-58702983	GM12878	blood:	n/a	n/a
30	POLR2A	chr15:58702524-58702844	GM12878	blood:	n/a	n/a
31	MAZ	chr15:58702456-58702763	GM12878	blood:	n/a	n/a
32	NFYB	chr15:58702491-58702867	GM12878	blood:	n/a	chr15:58702677-58702691
33	SPI1	chr15:58702570-58702812	GM12878	blood:	n/a	n/a
34	TBL1XR1	chr15:58702633-58702799	GM12878	blood:	n/a	n/a
35	TBL1XR1	chr15:58702562-58702967	K562	blood:	n/a	n/a
36	HEY1	chr15:58702627-58702881	K562	blood:	n/a	n/a
37	MYC	chr15:58702171-58702997	K562	blood:	n/a	chr15:58702252-58702261
38	POLR2A	chr15:58702343-58702918	U87	brain:	n/a	n/a
39	TAF1	chr15:58702627-58702880	GM12878	blood:	n/a	n/a
40	ELF1	chr15:58702499-58702989	K562	blood:	n/a	chr15:58702703-58702714 chr15:58702701-58702714
41	RCOR1	chr15:58702488-58702839	K562	blood:	n/a	n/a
42	MAZ	chr15:58702248-58702844	K562	blood:	n/a	chr15:58702252-58702261
43	ZNF384	chr15:58702018-58703088	K562	blood:	n/a	n/a

Variant related genes	Relation type
LIPC	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs436965	0.88[ASN][1000 genomes]
rs60808669	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58694800-58716000	Weak transcription	Esophagus	oesophagus
2	chr15:58700400-58702800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:58701800-58703000	Enhancers	Left Ventricle	heart
4	chr15:58702000-58702800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:58702200-58703000	Enhancers	Primary B cells from peripheral blood	blood
6	chr15:58702200-58703400	Flanking Active TSS	Dnd41	blood
7	chr15:58702400-58702800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:58702400-58702800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr15:58702400-58702800	Active TSS	Fetal Kidney	kidney
10	chr15:58702400-58703000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr15:58702400-58703000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:58702400-58703000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:58702400-58703000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr15:58702400-58703000	Active TSS	Aorta	Aorta
15	chr15:58702400-58703000	Active TSS	Duodenum Mucosa	Duodenum
16	chr15:58702400-58703000	Active TSS	Fetal Lung	lung
17	chr15:58702400-58703000	Active TSS	Placenta	Placenta
18	chr15:58702400-58703000	Flanking Active TSS	Fetal Thymus	thymus
19	chr15:58702400-58703000	Active TSS	Ovary	ovary
20	chr15:58702400-58703000	Active TSS	Rectal Smooth Muscle	rectum
21	chr15:58702400-58703000	Active TSS	Right Atrium	heart
22	chr15:58702400-58703000	Active TSS	Stomach Smooth Muscle	stomach
23	chr15:58702400-58703000	Flanking Active TSS	GM12878-XiMat	blood
24	chr15:58702400-58703200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:58702400-58703200	Active TSS	Primary monocytes fromperipheralblood	blood
26	chr15:58702400-58703200	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr15:58702400-58703200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:58702400-58703200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr15:58702400-58703200	Active TSS	Brain Hippocampus Middle	brain
30	chr15:58702400-58703200	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr15:58702400-58703200	Flanking Active TSS	K562	blood
32	chr15:58702400-58703200	Active TSS	Osteobl	bone
33	chr15:58702400-58703400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:58702400-58703400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:58702400-58703400	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr15:58702400-58703400	Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr15:58702400-58703400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr15:58702400-58703400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr15:58702400-58703400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:58702400-58703400	Active TSS	Brain Angular Gyrus	brain
41	chr15:58702400-58703400	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr15:58702400-58703400	Active TSS	Monocytes-CD14+_RO01746	blood
43	chr15:58702400-58703400	Active TSS	NHDF-Ad	bronchial
44	chr15:58702400-58703400	Active TSS	NHLF	lung
45	chr15:58702400-58704000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr15:58702400-58704800	Active TSS	Liver	Liver
47	chr15:58702600-58702800	Active TSS	Primary hematopoietic stem cells	blood
48	chr15:58702600-58702800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr15:58702600-58702800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:58702600-58703000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood

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