Variant report

Variant	rs57663732
Chromosome Location	chr8:54667787-54667788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:54667680..54670590-chr8:54671196..54673684,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56222736	1.00[AFR][1000 genomes]
rs56325119	1.00[AFR][1000 genomes]
rs57017768	1.00[AFR][1000 genomes]
rs57348174	1.00[AFR][1000 genomes]
rs58274230	1.00[AFR][1000 genomes]
rs58960877	1.00[AFR][1000 genomes]
rs59675285	1.00[AFR][1000 genomes]
rs61309000	1.00[AFR][1000 genomes]
rs73680333	1.00[AFR][1000 genomes]
rs73680339	1.00[AFR][1000 genomes]
rs73682545	1.00[AFR][1000 genomes]
rs73682546	1.00[AFR][1000 genomes]
rs73682554	1.00[AFR][1000 genomes]
rs73682558	1.00[AFR][1000 genomes]
rs73682562	1.00[AFR][1000 genomes]
rs73682565	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1021775	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv539621	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3439989	chr8:54667224-54669772	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3435292	chr8:54667399-54669547	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54642600-54672800	Weak transcription	Right Ventricle	heart
2	chr8:54645600-54671400	Weak transcription	NHLF	lung
3	chr8:54646000-54672600	Weak transcription	Psoas Muscle	Psoas
4	chr8:54650200-54671000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:54650200-54707400	Weak transcription	HUVEC	blood vessel
6	chr8:54651400-54670400	Weak transcription	Fetal Brain Male	brain
7	chr8:54652800-54673000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:54653400-54670000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr8:54655400-54669600	Weak transcription	Esophagus	oesophagus
10	chr8:54655400-54703600	Weak transcription	Brain Angular Gyrus	brain
11	chr8:54655600-54672400	Weak transcription	Fetal Heart	heart
12	chr8:54655800-54671000	Weak transcription	Fetal Brain Female	brain
13	chr8:54655800-54726000	Weak transcription	Colonic Mucosa	Colon
14	chr8:54656400-54669600	Weak transcription	Gastric	stomach
15	chr8:54656400-54672600	Weak transcription	Small Intestine	intestine
16	chr8:54656600-54676200	Weak transcription	Aorta	Aorta
17	chr8:54656800-54669600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:54656800-54680200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr8:54657000-54672600	Weak transcription	HepG2	liver
20	chr8:54657400-54671000	Weak transcription	Colon Smooth Muscle	Colon
21	chr8:54658400-54667800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:54658400-54670800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr8:54658400-54671000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr8:54658400-54679600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr8:54658600-54671000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr8:54658800-54671000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:54658800-54671000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:54659400-54671000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:54659400-54671000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr8:54660200-54669800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr8:54660400-54671400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr8:54660600-54671600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr8:54660800-54670000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:54660800-54670000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:54661000-54668000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr8:54661000-54668200	Strong transcription	Primary B cells from peripheral blood	blood
37	chr8:54661400-54669800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:54661600-54670000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr8:54661600-54670200	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr8:54661600-54671200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr8:54661600-54671400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr8:54661800-54673400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr8:54662000-54667800	Strong transcription	Liver	Liver
44	chr8:54662000-54670200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:54662200-54670200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:54662400-54670200	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr8:54662600-54670600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr8:54662600-54671600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr8:54662800-54672000	Strong transcription	Primary T cells from cord blood	blood
50	chr8:54663000-54667800	Strong transcription	Brain Anterior Caudate	brain

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