Variant report

Variant	rs73682554
Chromosome Location	chr8:54639373-54639374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:54629241..54631291-chr8:54638690..54641108,3	MCF-7	breast:
2	chr8:54620507..54623207-chr8:54638020..54640255,2	K562	blood:
3	chr8:54632819..54637804-chr8:54638171..54641276,4	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56222736	1.00[AFR][1000 genomes]
rs56325119	1.00[AFR][1000 genomes]
rs57017768	1.00[AFR][1000 genomes]
rs57348174	1.00[AFR][1000 genomes]
rs57663732	1.00[AFR][1000 genomes]
rs58274230	1.00[AFR][1000 genomes]
rs58960877	1.00[AFR][1000 genomes]
rs59675285	1.00[AFR][1000 genomes]
rs61309000	1.00[AFR][1000 genomes]
rs73680333	1.00[AFR][1000 genomes]
rs73680339	1.00[AFR][1000 genomes]
rs73682545	1.00[AFR][1000 genomes]
rs73682546	1.00[AFR][1000 genomes]
rs73682558	1.00[AFR][1000 genomes]
rs73682562	1.00[AFR][1000 genomes]
rs73682565	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1021775	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv539621	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54621400-54643600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:54624200-54640600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:54624200-54643600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:54625000-54640000	Weak transcription	Fetal Thymus	thymus
5	chr8:54625000-54642000	Weak transcription	Brain Substantia Nigra	brain
6	chr8:54625200-54639800	Weak transcription	Thymus	Thymus
7	chr8:54625200-54641200	Weak transcription	Brain Angular Gyrus	brain
8	chr8:54625200-54649000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:54625200-54649600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:54625400-54639400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr8:54625400-54639600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:54625400-54639600	Weak transcription	Fetal Lung	lung
13	chr8:54625400-54639800	Weak transcription	Fetal Intestine Large	intestine
14	chr8:54625400-54639800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:54625400-54639800	Weak transcription	HMEC	breast
16	chr8:54625400-54639800	Weak transcription	NH-A	brain
17	chr8:54625400-54640000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:54625400-54640600	Weak transcription	Fetal Brain Female	brain
19	chr8:54625400-54640600	Weak transcription	Psoas Muscle	Psoas
20	chr8:54625400-54640600	Weak transcription	Right Ventricle	heart
21	chr8:54625400-54640600	Weak transcription	NHLF	lung
22	chr8:54625400-54641800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:54625400-54641800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr8:54625400-54641800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:54625400-54642000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:54625400-54642000	Weak transcription	Fetal Muscle Leg	muscle
27	chr8:54625400-54645200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:54625400-54645800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr8:54625400-54646800	Weak transcription	Fetal Kidney	kidney
30	chr8:54625400-54649400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr8:54625600-54639400	Weak transcription	Brain Hippocampus Middle	brain
32	chr8:54625600-54640400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr8:54625600-54640800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr8:54625600-54642000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr8:54625600-54644400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr8:54625600-54647000	Weak transcription	Colon Smooth Muscle	Colon
37	chr8:54626200-54640000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr8:54626400-54647000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr8:54627200-54639400	Weak transcription	Adipose Nuclei	Adipose
40	chr8:54627200-54642400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr8:54627200-54644200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr8:54627200-54645600	Weak transcription	Dnd41	blood
43	chr8:54627400-54663400	Weak transcription	Hela-S3	cervix
44	chr8:54627600-54645800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr8:54627600-54649000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr8:54627800-54639800	Weak transcription	Osteobl	bone
47	chr8:54628000-54645800	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr8:54628200-54640200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr8:54628600-54640200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr8:54628600-54640600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links