Variant report

Variant	rs73680339
Chromosome Location	chr8:54784496-54784497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56222736	1.00[AFR][1000 genomes]
rs56325119	1.00[AFR][1000 genomes]
rs57017768	1.00[AFR][1000 genomes]
rs57348174	1.00[AFR][1000 genomes]
rs57663732	1.00[AFR][1000 genomes]
rs58274230	1.00[AFR][1000 genomes]
rs58960877	1.00[AFR][1000 genomes]
rs59675285	1.00[AFR][1000 genomes]
rs61309000	1.00[AFR][1000 genomes]
rs73680333	1.00[AFR][1000 genomes]
rs73682545	1.00[AFR][1000 genomes]
rs73682546	1.00[AFR][1000 genomes]
rs73682554	1.00[AFR][1000 genomes]
rs73682558	1.00[AFR][1000 genomes]
rs73682562	1.00[AFR][1000 genomes]
rs73682565	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021775	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539621	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54778200-54787200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:54782600-54788400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:54784200-54784600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:54784200-54784800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr8:54784200-54785200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
6	chr8:54784200-54785200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr8:54784200-54785600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr8:54784200-54789000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:54784400-54785000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
10	chr8:54784400-54785400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr8:54784400-54785400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:54784400-54785800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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