Variant report

Variant	rs57711715
Chromosome Location	chr8:127817622-127817623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10505495	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16901795	0.87[AMR][1000 genomes]
rs7017807	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73330318	0.87[AMR][1000 genomes]
rs73330329	0.87[AMR][1000 genomes]
rs73340975	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891438	chr8:127670339-127845702	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv515671	chr8:127798574-127823662	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127817200-127818000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr8:127817200-127818200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr8:127817400-127817800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr8:127817400-127817800	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr8:127817400-127817800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:127817400-127818000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr8:127817400-127818200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr8:127817400-127818200	Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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