Variant report

Variant	rs57713200
Chromosome Location	chr3:51776533-51776534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12493092	0.86[ASN][1000 genomes]
rs4687776	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55988860	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56181739	0.86[EUR][1000 genomes]
rs59034236	0.86[ASN][1000 genomes]
rs60087403	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51769200-51776600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:51773600-51776800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:51773800-51776800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:51774600-51776600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr3:51775200-51776600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:51776400-51776600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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