Variant report

Variant	rs60087403
Chromosome Location	chr3:51807783-51807784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12493092	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4687773	0.85[AMR][1000 genomes]
rs4687774	0.85[AMR][1000 genomes]
rs4687776	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55988860	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56181739	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57713200	0.95[EUR][1000 genomes]
rs59034236	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	esv3416846	chr3:51781117-51888179	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51807200-51808000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:51807200-51808000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:51807200-51808200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr3:51807400-51807800	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr3:51807400-51808000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:51807400-51808000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr3:51807400-51808000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:51807400-51808000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:51807400-51808000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:51807400-51808000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:51807400-51808200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:51807600-51808000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:51807600-51808000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:51807600-51808000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links