Variant report

Variant	rs4687773
Chromosome Location	chr3:51768909-51768910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11553574	0.93[EUR][1000 genomes]
rs12487957	0.84[GIH][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes]
rs12493092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12493496	0.84[JPT][hapmap]
rs13324384	0.80[EUR][1000 genomes]
rs1476290	0.81[GIH][hapmap];0.84[JPT][hapmap];0.87[TSI][hapmap]
rs2132914	0.87[EUR][1000 genomes]
rs4687599	0.80[EUR][1000 genomes]
rs4687769	0.80[EUR][1000 genomes]
rs4687774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687776	0.97[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55706150	0.80[EUR][1000 genomes]
rs56181739	0.84[AMR][1000 genomes]
rs59034236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59955041	0.93[EUR][1000 genomes]
rs60087403	0.85[AMR][1000 genomes]
rs72951490	0.80[EUR][1000 genomes]
rs7375146	0.80[EUR][1000 genomes]
rs73834265	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51768200-51769000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:51768200-51769000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:51768200-51769200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:51768200-51769200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:51768200-51769400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:51768200-51769400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:51768200-51769400	Enhancers	Dnd41	blood
8	chr3:51768400-51769000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:51768400-51769000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:51768400-51769000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:51768400-51769000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:51768400-51769000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:51768400-51769200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:51768400-51769200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr3:51768400-51769200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr3:51768400-51769200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:51768400-51769200	Flanking Active TSS	HepG2	liver
18	chr3:51768400-51769400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:51768600-51769000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr3:51768600-51769000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:51768600-51769000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:51768600-51769000	Enhancers	Fetal Thymus	thymus
23	chr3:51768600-51769200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr3:51768600-51769200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr3:51768600-51769200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr3:51768600-51769400	Enhancers	Primary T cells from cord blood	blood
27	chr3:51768800-51769000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr3:51768800-51769000	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr3:51768800-51769200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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