Variant report

Variant	rs73834265
Chromosome Location	chr3:51645406-51645407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11553574	0.87[EUR][1000 genomes]
rs12485610	0.87[EUR][1000 genomes]
rs12485825	0.89[ASN][1000 genomes]
rs12486568	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12487426	0.87[EUR][1000 genomes]
rs12490471	0.87[EUR][1000 genomes]
rs12492624	0.87[EUR][1000 genomes]
rs12493092	0.80[EUR][1000 genomes]
rs12493265	0.87[EUR][1000 genomes]
rs12493857	0.87[EUR][1000 genomes]
rs12494462	0.87[EUR][1000 genomes]
rs12496340	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13324384	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17051811	0.87[EUR][1000 genomes]
rs2082992	0.87[EUR][1000 genomes]
rs2082993	0.87[EUR][1000 genomes]
rs35536327	0.87[EUR][1000 genomes]
rs4687553	0.87[EUR][1000 genomes]
rs4687563	0.87[EUR][1000 genomes]
rs4687592	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687599	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687605	0.87[EUR][1000 genomes]
rs4687656	0.87[EUR][1000 genomes]
rs4687691	0.87[EUR][1000 genomes]
rs4687769	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687773	0.80[EUR][1000 genomes]
rs4687774	0.80[EUR][1000 genomes]
rs4687794	0.87[EUR][1000 genomes]
rs55667499	0.87[EUR][1000 genomes]
rs55706150	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55872019	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58059174	0.87[EUR][1000 genomes]
rs58189274	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58762652	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59034236	0.80[EUR][1000 genomes]
rs59564034	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60007226	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60606339	0.87[EUR][1000 genomes]
rs61689323	0.87[EUR][1000 genomes]
rs72951443	0.87[EUR][1000 genomes]
rs72951490	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7375146	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73834258	0.87[EUR][1000 genomes]
rs9827186	0.87[EUR][1000 genomes]
rs9842600	0.87[EUR][1000 genomes]
rs9843583	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv997264	chr3:51584056-51689648	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536570	chr3:51584056-51689648	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv999553	chr3:51584056-51696052	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51600800-51654600	Weak transcription	Stomach Mucosa	stomach
2	chr3:51625200-51655400	Weak transcription	Gastric	stomach
3	chr3:51625400-51663400	Weak transcription	Right Ventricle	heart
4	chr3:51625600-51654000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:51625600-51654000	Weak transcription	Ovary	ovary
6	chr3:51625600-51655400	Weak transcription	Aorta	Aorta
7	chr3:51625600-51658200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:51625800-51647000	Weak transcription	Fetal Brain Female	brain
9	chr3:51625800-51651000	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:51625800-51654000	Weak transcription	Left Ventricle	heart
11	chr3:51625800-51655200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:51625800-51655400	Weak transcription	Lung	lung
13	chr3:51625800-51655800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:51626000-51651400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:51626000-51654600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:51626000-51656600	Weak transcription	Placenta	Placenta
17	chr3:51626400-51651000	Weak transcription	Brain Anterior Caudate	brain
18	chr3:51628800-51660800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:51629600-51645800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:51629600-51652200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:51629800-51654000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:51629800-51655200	Weak transcription	Fetal Lung	lung
23	chr3:51630200-51651200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:51630400-51661400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr3:51630800-51647800	Weak transcription	Adipose Nuclei	Adipose
26	chr3:51630800-51661400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:51631000-51653800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:51631000-51655400	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:51631000-51661400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:51631000-51661600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr3:51631000-51661600	Weak transcription	Fetal Thymus	thymus
32	chr3:51631400-51653800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr3:51631800-51660800	Weak transcription	Primary B cells from cord blood	blood
34	chr3:51633000-51655800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:51634600-51655200	Weak transcription	Fetal Stomach	stomach
36	chr3:51636200-51661200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:51636600-51655200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr3:51637600-51660800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr3:51638200-51651200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:51638800-51652400	Weak transcription	HepG2	liver
41	chr3:51640200-51656400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:51640600-51650400	Weak transcription	Liver	Liver
43	chr3:51640600-51654600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr3:51640600-51655200	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr3:51640600-51661000	Weak transcription	Dnd41	blood
46	chr3:51640600-51661200	Weak transcription	Thymus	Thymus
47	chr3:51640600-51663200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr3:51640800-51654000	Weak transcription	Primary T cells from cord blood	blood
49	chr3:51643000-51652400	Weak transcription	Fetal Intestine Small	intestine
50	chr3:51643000-51654600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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