Variant report

Variant	rs12493092
Chromosome Location	chr3:51770943-51770944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11553574	0.93[EUR][1000 genomes]
rs12487957	0.93[EUR][1000 genomes]
rs13324384	0.80[EUR][1000 genomes]
rs2132914	0.87[EUR][1000 genomes]
rs4687599	0.80[EUR][1000 genomes]
rs4687769	0.80[EUR][1000 genomes]
rs4687773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4687774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4687776	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55706150	0.80[EUR][1000 genomes]
rs55988860	0.81[ASN][1000 genomes]
rs56181739	0.84[AMR][1000 genomes]
rs57713200	0.86[ASN][1000 genomes]
rs59034236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59955041	0.93[EUR][1000 genomes]
rs60087403	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72951490	0.80[EUR][1000 genomes]
rs7375146	0.80[EUR][1000 genomes]
rs73834265	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51769200-51772400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:51769200-51773200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:51769200-51776400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:51769200-51776600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:51769400-51772400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:51769400-51772400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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