Variant report

Variant	rs57728408
Chromosome Location	chr4:106416785-106416786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11097888	0.90[EUR][1000 genomes]
rs12108622	0.90[EUR][1000 genomes]
rs17035601	0.90[EUR][1000 genomes]
rs17035603	0.90[EUR][1000 genomes]
rs17035607	0.90[EUR][1000 genomes]
rs17035612	0.90[EUR][1000 genomes]
rs17035614	0.90[EUR][1000 genomes]
rs17035625	0.90[EUR][1000 genomes]
rs56042714	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59758094	0.90[EUR][1000 genomes]
rs60063074	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72950599	0.90[EUR][1000 genomes]
rs72952282	0.90[EUR][1000 genomes]
rs72952292	0.90[EUR][1000 genomes]
rs72952299	0.90[EUR][1000 genomes]
rs72954316	0.90[EUR][1000 genomes]
rs73836215	0.90[EUR][1000 genomes]
rs73836216	0.90[EUR][1000 genomes]
rs73836268	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73836269	0.90[EUR][1000 genomes]
rs73836273	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73836279	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7671891	0.90[EUR][1000 genomes]
rs9685855	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1002228	chr4:106346206-106433381	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106416400-106417400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:106416600-106417200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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