Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:106404967-106405396	HL-60	blood:	n/a	n/a
2	EP300	chr4:106405026-106405281	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106393672..106395391-chr4:106404396..106406000,2	MCF-7	breast:
2	chr4:106393178..106395974-chr4:106403458..106406397,4	K562	blood:

Variant related genes	Relation type
EEF1A1P9	TF binding region
ENSG00000138777	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11097888	1.00[EUR][1000 genomes]
rs12108622	1.00[EUR][1000 genomes]
rs17035601	1.00[EUR][1000 genomes]
rs17035603	1.00[EUR][1000 genomes]
rs17035607	1.00[EUR][1000 genomes]
rs17035612	1.00[EUR][1000 genomes]
rs17035614	1.00[EUR][1000 genomes]
rs17035625	1.00[EUR][1000 genomes]
rs28415199	0.90[EUR][1000 genomes]
rs35571699	0.90[EUR][1000 genomes]
rs56042714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57728408	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59758094	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60063074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950599	1.00[EUR][1000 genomes]
rs72952282	1.00[EUR][1000 genomes]
rs72952292	1.00[EUR][1000 genomes]
rs72952299	1.00[EUR][1000 genomes]
rs72954316	1.00[EUR][1000 genomes]
rs73836215	1.00[EUR][1000 genomes]
rs73836216	1.00[EUR][1000 genomes]
rs73836268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836269	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73836273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7671891	1.00[EUR][1000 genomes]
rs9685855	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv830027	chr4:106222010-106406738	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002228	chr4:106346206-106433381	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv964078	chr4:106404397-106407289	ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106404400-106405600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood

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