Variant report

Variant	rs73836269
Chromosome Location	chr4:106397724-106397725
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:106397697-106397778	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:106397675-106397725	Jurkat	blood:	n/a
2	chr4:106397675-106397725	HCPEpiC	choroid plexus:	n/a
3	chr4:106397675-106397725	ProgFib	skin:	n/a
4	chr4:106397675-106397725	HL-60	blood:	n/a
5	chr4:106397675-106397725	Hela-S3	cervix:	n/a
6	chr4:106397675-106397725	HMEC	breast:	n/a
7	chr4:106397675-106397725	SK-N-SH	brain:	n/a
8	chr4:106397675-106397725	HRE	kidney:	n/a
9	chr4:106397675-106397725	BE2_C	brain:	n/a
10	chr4:106397675-106397725	HAEpiC	amniotic membrane:	n/a
11	chr4:106397675-106397725	HUVEC	blood vessel:	n/a
12	chr4:106397675-106397725	NHBE	bronchial:	n/a
13	chr4:106397675-106397725	NT2-D1	testis:	n/a
14	chr4:106397675-106397725	HCF	heart:	n/a
15	chr4:106397675-106397725	LNCaP	prostate:	n/a
16	chr4:106397675-106397725	SKMC	muscle:	n/a
17	chr4:106397675-106397725	H1-hESC	embryonic stem cell:	embryo
18	chr4:106397675-106397725	K562	blood:	n/a
19	chr4:106397675-106397725	SK-N-MC	brain:	n/a
20	chr4:106397675-106397725	ECC-1	luminal epithelium:	n/a
21	chr4:106397675-106397725	GM12878	blood:	n/a
22	chr4:106397675-106397725	AG09309	skin:	n/a
23	chr4:106397675-106397725	HCT-116	colon:	n/a
24	chr4:106397675-106397725	A549	lung:	n/a
25	chr4:106397675-106397725	HIPEpiC	eye:	n/a
26	chr4:106397675-106397725	BJ	skin:	n/a
27	chr4:106397675-106397725	HPAEpiC	pulmonary alveolar:	n/a
28	chr4:106397675-106397725	HNPCEpiC	eye:	n/a
29	chr4:106397675-106397725	HRPEpiC	eye:	n/a
30	chr4:106397675-106397725	Hepatocyte	liver:	n/a
31	chr4:106397675-106397725	PrEC	prostate:	n/a
32	chr4:106397675-106397725	HEK293	kidney:	embryo
33	chr4:106397675-106397725	AG09319	gingival:	n/a
34	chr4:106397675-106397725	AG04450	lung:	fetal
35	chr4:106397675-106397725	NB4	blood:	n/a
36	chr4:106397675-106397725	GM12892	blood:	n/a
37	chr4:106397675-106397725	RPTEC	kidney:	n/a
38	chr4:106397675-106397725	NH-A	brain:	n/a
39	chr4:106397675-106397725	HRCEpiC	kidney:	n/a
40	chr4:106397675-106397725	HCM	heart:	n/a
41	chr4:106397675-106397725	GM06990	blood:	n/a
42	chr4:106397675-106397725	SAEC	small airway:	n/a
43	chr4:106397675-106397725	NHDF-neo	bronchial:	n/a
44	chr4:106397675-106397725	IMR90	lung:	fetal
45	chr4:106397675-106397725	HEEpiC	esophagus:	n/a
46	chr4:106397675-106397725	Caco-2	colon:	n/a
47	chr4:106397675-106397725	CMK	blood:	n/a
48	chr4:106397675-106397725	AoSMC	blood vessel:	n/a
49	chr4:106397675-106397725	ovcar-3	ovarian:	n/a
50	chr4:106397675-106397725	GM12891	blood:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106397655..106400410-chr4:106400778..106402535,3	MCF-7	breast:
2	chr4:106396519..106398113-chr4:106400268..106402056,2	K562	blood:

No data

Variant related genes	Relation type
PPA2	TF binding region
PPA2	CpG island

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11097888	1.00[EUR][1000 genomes]
rs12108622	1.00[EUR][1000 genomes]
rs17035601	1.00[EUR][1000 genomes]
rs17035603	1.00[EUR][1000 genomes]
rs17035607	1.00[EUR][1000 genomes]
rs17035612	1.00[EUR][1000 genomes]
rs17035614	1.00[EUR][1000 genomes]
rs17035625	1.00[EUR][1000 genomes]
rs28415199	0.90[EUR][1000 genomes]
rs35571699	0.90[EUR][1000 genomes]
rs56042714	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57728408	0.90[EUR][1000 genomes]
rs59758094	1.00[EUR][1000 genomes]
rs60063074	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72950599	1.00[EUR][1000 genomes]
rs72952282	1.00[EUR][1000 genomes]
rs72952292	1.00[EUR][1000 genomes]
rs72952299	1.00[EUR][1000 genomes]
rs72954316	1.00[EUR][1000 genomes]
rs73836215	1.00[EUR][1000 genomes]
rs73836216	1.00[EUR][1000 genomes]
rs73836268	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73836273	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73836279	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7671891	1.00[EUR][1000 genomes]
rs9685855	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv830027	chr4:106222010-106406738	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002228	chr4:106346206-106433381	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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