Variant report

Variant	rs577312306
Chromosome Location	chr19:21635774-21635775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	esv3506838	chr19:21634362-21639360	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv3506836	chr19:21635212-21639260	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv3318451	chr19:21635509-21638444	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	esv3506839	chr19:21635719-21638172	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	esv3506837	chr19:21635741-21638221	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv3506835	chr19:21635771-21638196	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21624600-21636400	Weak transcription	Fetal Kidney	kidney
2	chr19:21629800-21641400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr19:21630000-21642000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr19:21630200-21643800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr19:21630400-21643800	ZNF genes & repeats	Dnd41	blood
6	chr19:21631000-21638400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:21631800-21638200	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr19:21632000-21637200	Weak transcription	Primary T cells from cord blood	blood
9	chr19:21632200-21637000	Weak transcription	Fetal Lung	lung
10	chr19:21632200-21638000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:21632200-21638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:21632400-21635800	Weak transcription	Thymus	Thymus
13	chr19:21632400-21637000	Weak transcription	Ovary	ovary
14	chr19:21633600-21637000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr19:21633800-21641400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr19:21633800-21641400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:21634400-21636400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr19:21634600-21635800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:21634600-21635800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr19:21634600-21636400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr19:21634600-21636400	Weak transcription	Fetal Stomach	stomach
22	chr19:21634600-21636600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr19:21634600-21637400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr19:21634600-21641600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr19:21634800-21636400	Weak transcription	Brain Germinal Matrix	brain
26	chr19:21634800-21637400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr19:21635200-21635800	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr19:21635200-21637200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr19:21635400-21635800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr19:21635400-21635800	Weak transcription	Fetal Intestine Large	intestine
31	chr19:21635600-21635800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
32	chr19:21635600-21637400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr19:21635600-21642000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
34	chr19:21635600-21642000	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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