Variant report

Variant	rs57755169
Chromosome Location	chr3:159383751-159383752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1004091	0.86[EUR][1000 genomes]
rs16830546	1.00[EUR][1000 genomes]
rs57099692	0.86[EUR][1000 genomes]
rs57319340	1.00[ASN][1000 genomes]
rs59882603	0.86[EUR][1000 genomes]
rs7620654	1.00[ASN][1000 genomes]
rs9819000	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159380200-159386800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:159383200-159387200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:159383600-159385200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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