Variant report

Variant	rs1004091
Chromosome Location	chr3:159397234-159397235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16830546	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs57099692	1.00[EUR][1000 genomes]
rs57755169	0.86[EUR][1000 genomes]
rs59882603	1.00[EUR][1000 genomes]
rs6768439	1.00[CHB][hapmap]
rs7620654	1.00[CHB][hapmap]
rs9826416	1.00[CHB][hapmap]
rs9831125	1.00[CHB][hapmap]
rs9881603	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446943	chr3:159388471-159409743	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159385400-159397400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:159396600-159398000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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