Variant report

Variant	rs6768439
Chromosome Location	chr3:159377664-159377665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159372717..159375271-chr3:159377566..159380411,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1004091	1.00[CHB][hapmap]
rs1356925	0.80[EUR][1000 genomes]
rs16830484	0.80[EUR][1000 genomes]
rs16830510	0.83[EUR][1000 genomes]
rs16830633	1.00[CEU][hapmap]
rs1962890	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1980254	0.80[EUR][1000 genomes]
rs28434644	0.82[EUR][1000 genomes]
rs59412427	0.80[EUR][1000 genomes]
rs61036525	0.80[EUR][1000 genomes]
rs6769217	0.80[EUR][1000 genomes]
rs6772245	0.81[YRI][hapmap];0.81[AFR][1000 genomes]
rs6796636	0.80[EUR][1000 genomes]
rs7619259	0.80[EUR][1000 genomes]
rs7620654	1.00[CHB][hapmap]
rs7629269	0.80[EUR][1000 genomes]
rs7653224	0.80[EUR][1000 genomes]
rs9817830	0.80[EUR][1000 genomes]
rs9818110	0.80[EUR][1000 genomes]
rs9821936	0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823562	0.80[EUR][1000 genomes]
rs9825694	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9826416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829229	0.80[EUR][1000 genomes]
rs9831125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832443	0.80[EUR][1000 genomes]
rs9840484	0.80[EUR][1000 genomes]
rs9852770	0.80[EUR][1000 genomes]
rs9857497	0.86[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860690	0.80[EUR][1000 genomes]
rs9863199	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9864641	0.80[EUR][1000 genomes]
rs9866095	0.80[EUR][1000 genomes]
rs9881499	0.80[EUR][1000 genomes]
rs9882993	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159356400-159379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:159377400-159383200	Weak transcription	Left Ventricle	heart

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