Variant report

Variant	rs9826416
Chromosome Location	chr3:159386571-159386572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1004091	1.00[CHB][hapmap]
rs1356925	0.80[EUR][1000 genomes]
rs16830484	0.80[EUR][1000 genomes]
rs16830510	0.83[EUR][1000 genomes]
rs16830633	1.00[CEU][hapmap]
rs1962890	0.94[EUR][1000 genomes]
rs1980254	0.80[EUR][1000 genomes]
rs28434644	0.82[EUR][1000 genomes]
rs59412427	0.80[EUR][1000 genomes]
rs61036525	0.80[EUR][1000 genomes]
rs6767038	1.00[CEU][hapmap]
rs6768439	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769217	0.80[EUR][1000 genomes]
rs6796636	0.80[EUR][1000 genomes]
rs7619259	0.80[EUR][1000 genomes]
rs7620654	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7629269	0.80[EUR][1000 genomes]
rs7638815	1.00[CEU][hapmap]
rs7653224	0.80[EUR][1000 genomes]
rs9817830	0.80[EUR][1000 genomes]
rs9818110	0.80[EUR][1000 genomes]
rs9821936	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823562	0.80[EUR][1000 genomes]
rs9825694	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9829229	0.80[EUR][1000 genomes]
rs9831125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832443	0.80[EUR][1000 genomes]
rs9840484	0.80[EUR][1000 genomes]
rs9852770	0.80[EUR][1000 genomes]
rs9857497	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860690	0.80[EUR][1000 genomes]
rs9863199	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9864641	0.80[EUR][1000 genomes]
rs9866095	0.80[EUR][1000 genomes]
rs9881499	0.80[EUR][1000 genomes]
rs9882993	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159380200-159386800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:159383200-159387200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:159383800-159395000	Weak transcription	Right Atrium	heart
4	chr3:159384800-159387600	Enhancers	Fetal Heart	heart
5	chr3:159385400-159387000	Weak transcription	Right Ventricle	heart
6	chr3:159385400-159391000	Weak transcription	HMEC	breast
7	chr3:159385400-159397400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:159385600-159387400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:159386000-159392600	Weak transcription	Left Ventricle	heart
10	chr3:159386200-159387200	Enhancers	HSMMtube	muscle
11	chr3:159386200-159387800	Enhancers	Fetal Intestine Large	intestine
12	chr3:159386200-159388000	Enhancers	Fetal Intestine Small	intestine
13	chr3:159386400-159386800	Enhancers	Placenta	Placenta
14	chr3:159386400-159386800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr3:159386400-159387000	Enhancers	Liver	Liver
16	chr3:159386400-159387200	Flanking Active TSS	A549	lung
17	chr3:159386400-159387400	Enhancers	Hela-S3	cervix
18	chr3:159386400-159388400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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