Variant report

Variant	rs1980254
Chromosome Location	chr3:159312860-159312861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10154893	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1030882	0.84[ASN][1000 genomes]
rs12106839	0.84[ASN][1000 genomes]
rs12107648	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1343824	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1347671	0.81[ASN][1000 genomes]
rs1356925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1356926	0.98[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1356927	0.86[ASN][1000 genomes]
rs1437519	0.89[ASN][1000 genomes]
rs1437520	0.81[ASN][1000 genomes]
rs16830480	0.84[ASN][1000 genomes]
rs16830484	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16830487	0.82[EUR][1000 genomes]
rs16830507	0.82[EUR][1000 genomes]
rs16830510	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16830519	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16830523	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16830534	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1816621	0.81[ASN][1000 genomes]
rs28743043	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4494974	0.81[ASN][1000 genomes]
rs59412427	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59556163	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61018732	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61036525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61373569	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6768439	0.80[EUR][1000 genomes]
rs6769217	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6796636	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73012253	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7619259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629269	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7653224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9290045	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9817830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9818110	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9819080	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9821936	0.84[EUR][1000 genomes]
rs9823562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9824363	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9826416	0.80[EUR][1000 genomes]
rs9829229	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9831125	0.80[EUR][1000 genomes]
rs9832443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9833713	0.86[ASN][1000 genomes]
rs9840484	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9848763	0.81[ASN][1000 genomes]
rs9848897	0.81[ASN][1000 genomes]
rs9852770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857497	0.80[EUR][1000 genomes]
rs9860690	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9864641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870872	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9871035	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9871188	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9881499	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9882328	0.81[ASN][1000 genomes]
rs9882993	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159311000-159313000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:159312800-159313200	Enhancers	Spleen	Spleen
3	chr3:159312800-159313200	Bivalent Enhancer	HUVEC	blood vessel
4	chr3:159312800-159313400	Enhancers	Adipose Nuclei	Adipose

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