Variant report

Variant	rs9870872
Chromosome Location	chr3:159336072-159336073
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10154893	0.98[ASN][1000 genomes]
rs1030882	0.82[ASN][1000 genomes]
rs11921824	0.85[ASN][1000 genomes]
rs11921827	0.85[ASN][1000 genomes]
rs12106839	0.82[ASN][1000 genomes]
rs12107648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1343824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1347671	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1356925	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1356927	0.84[ASN][1000 genomes]
rs1437519	0.82[ASN][1000 genomes]
rs1437520	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16830480	0.82[ASN][1000 genomes]
rs16830484	0.83[ASN][1000 genomes]
rs16830510	0.84[ASN][1000 genomes]
rs16830519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16830523	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16830534	1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16830575	0.85[ASN][1000 genomes]
rs16830579	0.84[ASN][1000 genomes]
rs16830581	0.82[ASN][1000 genomes]
rs1816621	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1962890	0.85[ASN][1000 genomes]
rs1980254	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28434644	0.86[ASN][1000 genomes]
rs28743043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4494974	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59412427	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59556163	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60665389	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61018732	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61036525	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61373569	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6769217	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6796636	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73012253	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs750688	0.85[ASN][1000 genomes]
rs7619259	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7629269	0.83[ASN][1000 genomes]
rs7637524	0.91[ASN][1000 genomes]
rs7653224	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9290045	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9809076	0.85[ASN][1000 genomes]
rs9817830	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9818110	0.83[ASN][1000 genomes]
rs9819000	0.88[ASN][1000 genomes]
rs9819080	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823562	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9824363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9829229	0.83[ASN][1000 genomes]
rs9832443	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9832970	0.86[ASN][1000 genomes]
rs9833713	0.84[ASN][1000 genomes]
rs9840484	0.84[AMR][1000 genomes]
rs9848763	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9848897	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9849705	0.88[ASN][1000 genomes]
rs9851700	0.85[ASN][1000 genomes]
rs9852770	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9857283	0.93[ASN][1000 genomes]
rs9860690	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9864641	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9866095	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9867212	0.85[ASN][1000 genomes]
rs9879792	0.85[ASN][1000 genomes]
rs9881499	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9881603	0.91[ASN][1000 genomes]
rs9882328	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882993	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159328000-159336400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:159335400-159336400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:159335400-159336400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:159335400-159336600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:159335600-159336600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:159335600-159336800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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