Variant report

Variant	rs61018732
Chromosome Location	chr3:159341404-159341405
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159338829..159341942-chr3:159480154..159482623,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10154893	0.96[ASN][1000 genomes]
rs1030882	0.83[ASN][1000 genomes]
rs11921824	0.84[ASN][1000 genomes]
rs11921827	0.84[ASN][1000 genomes]
rs12106839	0.83[ASN][1000 genomes]
rs12107648	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1343824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347671	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1356925	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1356927	0.86[ASN][1000 genomes]
rs1437519	0.83[ASN][1000 genomes]
rs1437520	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16830480	0.83[ASN][1000 genomes]
rs16830484	0.84[ASN][1000 genomes]
rs16830510	0.86[ASN][1000 genomes]
rs16830519	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16830523	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16830534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16830575	0.84[ASN][1000 genomes]
rs16830579	0.83[ASN][1000 genomes]
rs16830581	0.81[ASN][1000 genomes]
rs1816621	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1962890	0.84[ASN][1000 genomes]
rs1980254	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28434644	0.85[ASN][1000 genomes]
rs28743043	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4494974	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59412427	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59556163	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60665389	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61036525	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61373569	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769217	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6796636	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73012253	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs750688	0.84[ASN][1000 genomes]
rs7619259	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7629269	0.84[ASN][1000 genomes]
rs7637524	0.93[ASN][1000 genomes]
rs7653224	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9290045	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9809076	0.84[ASN][1000 genomes]
rs9817830	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9818110	0.84[ASN][1000 genomes]
rs9819000	0.87[ASN][1000 genomes]
rs9819080	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9823562	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9824363	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829229	0.84[ASN][1000 genomes]
rs9832443	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9832970	0.85[ASN][1000 genomes]
rs9833713	0.86[ASN][1000 genomes]
rs9840484	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9848763	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9848897	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9849705	0.87[ASN][1000 genomes]
rs9851700	0.84[ASN][1000 genomes]
rs9852770	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9857283	0.91[ASN][1000 genomes]
rs9860690	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9864641	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9866095	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9867212	0.84[ASN][1000 genomes]
rs9870872	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9879792	0.84[ASN][1000 genomes]
rs9881499	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9881603	0.93[ASN][1000 genomes]
rs9882328	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9882993	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159337600-159342800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:159337600-159344200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:159338600-159344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:159338600-159344400	Weak transcription	HSMMtube	muscle
5	chr3:159339200-159342400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:159339200-159350200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:159339400-159342400	Weak transcription	NHEK	skin
8	chr3:159339600-159342400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:159339600-159342400	Weak transcription	HMEC	breast
10	chr3:159340000-159342000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:159340200-159345400	Weak transcription	Fetal Heart	heart
12	chr3:159340200-159347400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:159340600-159341600	Weak transcription	Liver	Liver

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