Variant report

Variant	rs16830519
Chromosome Location	chr3:159328865-159328866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159328334..159331919-chr3:159337516..159340133,3	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10154893	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11921824	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs11921827	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12107648	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13434009	0.86[JPT][hapmap]
rs1343824	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1347671	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1347672	0.84[JPT][hapmap]
rs1356925	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1356926	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1356927	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs1437519	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs1437520	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1581342	0.86[JPT][hapmap]
rs16830453	0.81[CHB][hapmap]
rs16830454	0.81[CHB][hapmap]
rs16830484	0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs16830510	1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.87[ASN][1000 genomes]
rs16830523	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16830534	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16830546	0.86[JPT][hapmap]
rs16830575	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs16830579	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs16830581	0.92[JPT][hapmap]
rs16830589	0.84[JPT][hapmap]
rs1816621	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1962890	0.83[ASN][1000 genomes]
rs1978830	0.93[JPT][hapmap]
rs1978831	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1980254	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2118321	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs28434644	0.84[ASN][1000 genomes]
rs28743043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886621	0.93[JPT][hapmap]
rs3930053	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs4494974	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59412427	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59556163	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60665389	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61018732	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61036525	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61373569	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6769217	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6772245	0.92[JPT][hapmap]
rs6796636	1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73012253	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs750688	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs7619259	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7625882	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7629269	0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs7636120	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs7637524	0.89[ASN][1000 genomes]
rs7650974	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7653224	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9290045	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9290046	0.84[JPT][hapmap]
rs9290047	0.86[JPT][hapmap]
rs9809076	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9809681	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9817830	0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9818110	0.81[ASN][1000 genomes]
rs9819000	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs9819080	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9823562	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9824363	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9826417	0.86[JPT][hapmap]
rs9829229	0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9829310	0.93[JPT][hapmap]
rs9832443	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9832970	0.84[ASN][1000 genomes]
rs9833614	0.86[JPT][hapmap]
rs9833713	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs9833762	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9840484	0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9842465	0.84[JPT][hapmap]
rs9848763	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9848897	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9849705	0.85[ASN][1000 genomes]
rs9851700	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9852770	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9857283	0.90[ASN][1000 genomes]
rs9860690	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9864641	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9866095	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9867212	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9870872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9871188	0.81[ASN][1000 genomes]
rs9877425	0.93[JPT][hapmap]
rs9879792	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs9881499	0.91[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9881603	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs9882328	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9882993	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs9883498	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159328000-159336400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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