Variant report

Variant	rs9819080
Chromosome Location	chr3:159337480-159337481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10154893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1030882	0.82[ASN][1000 genomes]
rs11921824	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs11921827	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs12106839	0.82[ASN][1000 genomes]
rs12107648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13434009	0.86[JPT][hapmap]
rs1343824	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1347671	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1347672	0.84[JPT][hapmap]
rs1356925	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1356926	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1356927	0.91[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs1437519	0.90[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs1437520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1581342	0.86[JPT][hapmap]
rs16830480	0.82[ASN][1000 genomes]
rs16830484	1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs16830510	0.91[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs16830519	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16830523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16830534	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16830546	0.86[JPT][hapmap]
rs16830575	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs16830579	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs16830581	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs16830589	0.84[JPT][hapmap]
rs1816621	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1962890	0.85[ASN][1000 genomes]
rs1978830	0.93[JPT][hapmap]
rs1978831	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1980254	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2118321	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs28434644	0.86[ASN][1000 genomes]
rs28743043	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2886621	0.93[JPT][hapmap]
rs3930053	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4494974	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59412427	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59556163	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60665389	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61018732	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61036525	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61373569	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6769217	0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6772245	0.92[JPT][hapmap]
rs6796636	0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73012253	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs750688	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs7619259	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7625882	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7629269	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7636120	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7637524	0.91[ASN][1000 genomes]
rs7650974	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7653224	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9290045	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9290046	0.84[JPT][hapmap]
rs9290047	0.86[JPT][hapmap]
rs9809076	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs9809681	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs9817830	1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9818110	0.83[ASN][1000 genomes]
rs9819000	0.90[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs9823562	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9824363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9826417	0.86[JPT][hapmap]
rs9829229	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9829310	0.93[JPT][hapmap]
rs9832443	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9832970	0.86[ASN][1000 genomes]
rs9833614	0.86[JPT][hapmap]
rs9833713	0.91[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs9833762	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs9840484	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs9842465	0.84[JPT][hapmap]
rs9848763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9848897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9849705	0.88[ASN][1000 genomes]
rs9851700	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs9852770	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9857283	0.93[ASN][1000 genomes]
rs9860690	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9864641	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9866095	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9867212	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs9870872	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877425	0.92[JPT][hapmap]
rs9879792	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs9881499	1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9881603	0.90[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs9882328	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882993	0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9883498	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159336400-159337600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:159336400-159337600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:159336400-159338200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:159336400-159338600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:159336400-159340200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:159336400-159340200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:159336600-159337600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:159336600-159337600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:159336600-159337800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:159336600-159338400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:159336600-159339200	Enhancers	HSMM	muscle
12	chr3:159336600-159340200	Enhancers	NHLF	lung
13	chr3:159336600-159340400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:159336800-159337600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:159336800-159338000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:159337000-159337600	Enhancers	Brain Anterior Caudate	brain
17	chr3:159337000-159337600	Enhancers	Colon Smooth Muscle	Colon
18	chr3:159337000-159337800	Enhancers	Fetal Kidney	kidney
19	chr3:159337000-159338000	Enhancers	Aorta	Aorta
20	chr3:159337000-159338000	Enhancers	Liver	Liver
21	chr3:159337000-159338000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr3:159337000-159338000	Enhancers	Brain Substantia Nigra	brain
23	chr3:159337000-159338200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:159337000-159338400	Enhancers	Osteobl	bone
25	chr3:159337000-159338600	Enhancers	Brain Hippocampus Middle	brain
26	chr3:159337000-159338800	Enhancers	Hela-S3	cervix
27	chr3:159337000-159339200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:159337000-159339400	Enhancers	HUVEC	blood vessel
29	chr3:159337000-159339400	Enhancers	NH-A	brain
30	chr3:159337000-159340200	Enhancers	NHDF-Ad	bronchial
31	chr3:159337200-159337600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:159337200-159337600	Flanking Active TSS	A549	lung
33	chr3:159337200-159337800	Enhancers	Brain Angular Gyrus	brain
34	chr3:159337200-159337800	Enhancers	Brain Cingulate Gyrus	brain
35	chr3:159337200-159338600	Enhancers	HSMMtube	muscle
36	chr3:159337200-159339000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:159337200-159339200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:159337200-159339600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:159337200-159340000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:159337400-159337800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr3:159337400-159339600	Weak transcription	Left Ventricle	heart
42	chr3:159337400-159339800	Weak transcription	Fetal Stomach	stomach
43	chr3:159337400-159339800	Weak transcription	Right Ventricle	heart

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