Variant report

Variant	rs16830480
Chromosome Location	chr3:159301464-159301465
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1030882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107648	0.83[ASN][1000 genomes]
rs1343824	0.83[ASN][1000 genomes]
rs1356925	0.82[ASN][1000 genomes]
rs1356927	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1437519	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16830453	0.87[ASN][1000 genomes]
rs16830454	0.87[ASN][1000 genomes]
rs16830484	0.89[ASN][1000 genomes]
rs16830510	0.93[ASN][1000 genomes]
rs16830534	0.82[ASN][1000 genomes]
rs16830546	1.00[AMR][1000 genomes]
rs1980254	0.84[ASN][1000 genomes]
rs28718721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59556163	0.81[ASN][1000 genomes]
rs61018732	0.83[ASN][1000 genomes]
rs61036525	0.82[ASN][1000 genomes]
rs61373569	0.83[ASN][1000 genomes]
rs6769217	0.85[ASN][1000 genomes]
rs6796636	0.85[ASN][1000 genomes]
rs73012253	0.82[ASN][1000 genomes]
rs7619259	0.84[ASN][1000 genomes]
rs7629269	0.89[ASN][1000 genomes]
rs7637524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7653224	0.84[ASN][1000 genomes]
rs9290045	0.81[ASN][1000 genomes]
rs9809681	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9814630	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9817830	0.82[ASN][1000 genomes]
rs9818110	0.89[ASN][1000 genomes]
rs9819000	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9819080	0.82[ASN][1000 genomes]
rs9823562	0.82[ASN][1000 genomes]
rs9824363	0.83[ASN][1000 genomes]
rs9829229	0.89[ASN][1000 genomes]
rs9832443	0.82[ASN][1000 genomes]
rs9833713	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9840484	0.85[ASN][1000 genomes]
rs9849705	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9852770	0.82[ASN][1000 genomes]
rs9857283	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9860690	0.82[ASN][1000 genomes]
rs9864641	0.82[ASN][1000 genomes]
rs9866095	0.82[ASN][1000 genomes]
rs9870872	0.82[ASN][1000 genomes]
rs9871035	0.81[ASN][1000 genomes]
rs9871188	0.86[ASN][1000 genomes]
rs9881499	0.82[ASN][1000 genomes]
rs9881603	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9882993	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	esv3692798	chr3:159269142-159302556	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159298400-159304000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:159301000-159302000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:159301000-159302800	Enhancers	NHDF-Ad	bronchial
4	chr3:159301200-159301800	Enhancers	HSMMtube	muscle
5	chr3:159301400-159301800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:159301400-159301800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:159301400-159301800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:159301400-159301800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:159301400-159302000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:159301400-159302000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:159301400-159302400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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