Variant report

Variant	rs9814630
Chromosome Location	chr3:159331005-159331006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1030882	0.86[AFR][1000 genomes]
rs12106839	0.86[AFR][1000 genomes]
rs1356927	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1437519	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16830480	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6789368	1.00[MEX][hapmap]
rs9809681	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9833713	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9881603	0.90[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159328000-159336400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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