Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10513539	1.00[GIH][hapmap];0.86[EUR][1000 genomes]
rs10513542	0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10513543	0.86[EUR][1000 genomes]
rs11919028	0.86[EUR][1000 genomes]
rs11919032	1.00[GIH][hapmap];0.86[EUR][1000 genomes]
rs12106686	0.86[EUR][1000 genomes]
rs16830532	1.00[GIH][hapmap];0.86[EUR][1000 genomes]
rs16830533	0.86[EUR][1000 genomes]
rs28366645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28715518	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6793914	0.86[AFR][1000 genomes]
rs73012276	0.86[EUR][1000 genomes]
rs73012277	0.86[EUR][1000 genomes]
rs73012294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012298	0.86[EUR][1000 genomes]
rs73012300	0.86[EUR][1000 genomes]
rs73014103	0.86[EUR][1000 genomes]
rs73014170	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs750688	1.00[GIH][hapmap]
rs7630289	1.00[GIH][hapmap];0.86[EUR][1000 genomes]
rs979774	0.86[EUR][1000 genomes]
rs9814630	1.00[MEX][hapmap]
rs9821757	0.86[EUR][1000 genomes]
rs9822265	0.86[EUR][1000 genomes]
rs9826238	0.86[EUR][1000 genomes]
rs9851213	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9859402	0.86[EUR][1000 genomes]
rs9860189	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9866650	1.00[GIH][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	esv3446943	chr3:159388471-159409743	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159383800-159395000	Weak transcription	Right Atrium	heart
2	chr3:159385400-159391000	Weak transcription	HMEC	breast
3	chr3:159385400-159397400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:159386000-159392600	Weak transcription	Left Ventricle	heart
5	chr3:159387600-159390800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:159387800-159392000	Weak transcription	NHEK	skin
7	chr3:159387800-159392200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:159388200-159392000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:159389400-159392000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:159390200-159392200	Enhancers	Fetal Intestine Large	intestine
11	chr3:159390400-159391200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:159390400-159391200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:159390400-159391400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:159390400-159391600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr3:159390400-159391600	Enhancers	Fetal Intestine Small	intestine

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