Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10513539	0.86[EUR][1000 genomes]
rs10513543	0.86[EUR][1000 genomes]
rs11919028	0.86[EUR][1000 genomes]
rs11919032	0.86[EUR][1000 genomes]
rs12106686	0.86[EUR][1000 genomes]
rs16830532	0.86[EUR][1000 genomes]
rs16830533	0.86[EUR][1000 genomes]
rs28366645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28715518	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6789368	0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793914	0.83[AFR][1000 genomes]
rs73012276	0.86[EUR][1000 genomes]
rs73012277	0.86[EUR][1000 genomes]
rs73012294	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012298	0.86[EUR][1000 genomes]
rs73012300	0.86[EUR][1000 genomes]
rs73014103	0.86[EUR][1000 genomes]
rs73014170	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7630289	0.86[EUR][1000 genomes]
rs979774	0.86[EUR][1000 genomes]
rs9821757	0.86[EUR][1000 genomes]
rs9822265	0.86[EUR][1000 genomes]
rs9826238	0.86[EUR][1000 genomes]
rs9851213	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9859402	0.86[EUR][1000 genomes]
rs9860189	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9866650	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159356400-159379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:159377200-159377400	Enhancers	Left Ventricle	heart

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