Variant report

Variant	rs9826238
Chromosome Location	chr3:159386327-159386328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10513539	1.00[EUR][1000 genomes]
rs10513542	0.86[EUR][1000 genomes]
rs10513543	1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919028	1.00[EUR][1000 genomes]
rs11919032	1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106686	1.00[EUR][1000 genomes]
rs16830532	1.00[EUR][1000 genomes]
rs16830533	1.00[EUR][1000 genomes]
rs16830633	1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28366645	0.86[EUR][1000 genomes]
rs6789368	0.86[EUR][1000 genomes]
rs73012276	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73012277	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73012280	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73012283	0.80[AMR][1000 genomes]
rs73012294	0.86[EUR][1000 genomes]
rs73012298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012300	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014170	0.86[EUR][1000 genomes]
rs7630289	1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979774	1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821757	1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822265	1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859402	1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159380200-159386800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:159383200-159387200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:159383800-159395000	Weak transcription	Right Atrium	heart
4	chr3:159384800-159387600	Enhancers	Fetal Heart	heart
5	chr3:159385400-159387000	Weak transcription	Right Ventricle	heart
6	chr3:159385400-159391000	Weak transcription	HMEC	breast
7	chr3:159385400-159397400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:159385600-159387400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:159386000-159392600	Weak transcription	Left Ventricle	heart
10	chr3:159386200-159386400	Enhancers	A549	lung
11	chr3:159386200-159387200	Enhancers	HSMMtube	muscle
12	chr3:159386200-159387800	Enhancers	Fetal Intestine Large	intestine
13	chr3:159386200-159388000	Enhancers	Fetal Intestine Small	intestine

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