Variant report

Variant	rs11919032
Chromosome Location	chr3:159387614-159387615
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10513539	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10513542	0.86[EUR][1000 genomes]
rs10513543	1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919028	1.00[EUR][1000 genomes]
rs12106686	1.00[EUR][1000 genomes]
rs12107648	1.00[TSI][hapmap]
rs1356925	1.00[TSI][hapmap]
rs1437520	1.00[TSI][hapmap]
rs1461103	1.00[CHD][hapmap]
rs1675497	1.00[CHD][hapmap]
rs16830487	1.00[TSI][hapmap]
rs16830532	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16830533	1.00[EUR][1000 genomes]
rs16830633	1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28366645	0.86[EUR][1000 genomes]
rs2886623	1.00[CHD][hapmap]
rs3863075	1.00[CHD][hapmap]
rs3911714	1.00[CHD][hapmap]
rs3930053	1.00[TSI][hapmap]
rs4513503	1.00[CHD][hapmap]
rs6441275	1.00[CHD][hapmap]
rs6789368	1.00[GIH][hapmap];0.86[EUR][1000 genomes]
rs73012276	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73012277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73012280	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73012283	0.80[AMR][1000 genomes]
rs73012294	0.86[EUR][1000 genomes]
rs73012298	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012300	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014103	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014170	0.86[EUR][1000 genomes]
rs750688	1.00[GIH][hapmap]
rs7619259	1.00[TSI][hapmap]
rs7629269	1.00[TSI][hapmap]
rs7630289	0.85[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636819	1.00[CHD][hapmap]
rs7653224	1.00[TSI][hapmap]
rs9290045	1.00[TSI][hapmap]
rs979774	1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821757	1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822265	1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824363	1.00[TSI][hapmap]
rs9826238	1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829229	0.83[TSI][hapmap]
rs9831125	0.83[TSI][hapmap]
rs9859402	1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866095	1.00[TSI][hapmap]
rs9866650	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159383800-159395000	Weak transcription	Right Atrium	heart
2	chr3:159385400-159391000	Weak transcription	HMEC	breast
3	chr3:159385400-159397400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:159386000-159392600	Weak transcription	Left Ventricle	heart
5	chr3:159386200-159387800	Enhancers	Fetal Intestine Large	intestine
6	chr3:159386200-159388000	Enhancers	Fetal Intestine Small	intestine
7	chr3:159386400-159388400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:159386600-159388400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr3:159387000-159388000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:159387000-159388000	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr3:159387200-159387800	Enhancers	NHEK	skin
12	chr3:159387200-159388200	Enhancers	A549	lung
13	chr3:159387200-159388800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:159387400-159387800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:159387400-159387800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:159387400-159387800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:159387600-159388000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:159387600-159390800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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