Variant report

Variant	rs1461103
Chromosome Location	chr3:159523088-159523089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:159499592..159500128-chr3:159522767..159523524,2	MCF-7	breast:
2	chr3:158981206..158982290-chr3:159522701..159523950,4	MCF-7	breast:
3	chr3:158984308..158985171-chr3:159522442..159523115,2	MCF-7	breast:
4	chr3:158981274..158982171-chr3:159522659..159523603,3	K562	blood:
5	chr3:158978276..158980679-chr3:159523029..159524733,2	MCF-7	breast:
6	chr3:158984359..158985173-chr3:159522794..159523518,2	MCF-7	breast:
7	chr3:159499259..159500349-chr3:159522676..159523605,6	MCF-7	breast:
8	chr3:159479968..159483823-chr3:159521256..159524933,5	MCF-7	breast:
9	chr3:159333748..159334542-chr3:159522650..159523462,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11919032	1.00[CHD][hapmap]
rs13070254	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463514	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1675497	0.89[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1965998	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126143	0.96[CEU][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2169303	0.96[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886623	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33050	1.00[JPT][hapmap]
rs33054	1.00[JPT][hapmap]
rs33056	1.00[JPT][hapmap]
rs3851360	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3863075	0.96[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3889311	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3911714	0.96[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513503	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680520	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680527	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6441274	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441275	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788052	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6802934	0.85[AMR][1000 genomes]
rs6805556	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7625089	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630289	1.00[CHD][hapmap]
rs7636819	0.96[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820045	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159513400-159523600	Enhancers	Rectal Smooth Muscle	rectum
2	chr3:159516000-159524000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:159517200-159523200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:159517200-159524000	Weak transcription	Liver	Liver
5	chr3:159517600-159523200	Weak transcription	Placenta	Placenta
6	chr3:159517600-159524200	Weak transcription	NHEK	skin
7	chr3:159518000-159524400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:159518400-159531200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:159518800-159524400	Weak transcription	Left Ventricle	heart
10	chr3:159518800-159531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:159520000-159526200	Enhancers	Brain Substantia Nigra	brain
12	chr3:159520000-159526400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:159520200-159523200	Enhancers	HUVEC	blood vessel
14	chr3:159520400-159523400	Enhancers	NH-A	brain
15	chr3:159521200-159523400	Enhancers	A549	lung
16	chr3:159521200-159523600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:159521600-159526200	Weak transcription	Fetal Stomach	stomach
18	chr3:159521800-159525800	Enhancers	Brain Angular Gyrus	brain
19	chr3:159521800-159525800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr3:159521800-159526600	Enhancers	Brain Cingulate Gyrus	brain
21	chr3:159522000-159523600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:159522000-159523600	Enhancers	Fetal Muscle Leg	muscle
23	chr3:159522000-159524600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:159522200-159523200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:159522200-159523200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:159522200-159523600	Enhancers	HSMMtube	muscle
27	chr3:159522200-159524200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:159522200-159525800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:159522400-159523400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:159522400-159523400	Enhancers	Brain Anterior Caudate	brain
31	chr3:159522400-159523400	Enhancers	Right Ventricle	heart
32	chr3:159522400-159523600	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr3:159522400-159525000	Enhancers	NHLF	lung
34	chr3:159522400-159525800	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr3:159522400-159526800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:159522600-159523400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:159522600-159523400	Enhancers	Fetal Kidney	kidney
38	chr3:159522600-159525600	Enhancers	HMEC	breast
39	chr3:159522600-159525800	Enhancers	NHDF-Ad	bronchial
40	chr3:159522600-159526600	Enhancers	Adipose Nuclei	Adipose
41	chr3:159522800-159523400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr3:159522800-159523400	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr3:159522800-159523400	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr3:159522800-159523400	Enhancers	Stomach Mucosa	stomach
45	chr3:159522800-159523400	Enhancers	Hela-S3	cervix
46	chr3:159522800-159525200	Enhancers	HSMM	muscle
47	chr3:159522800-159526400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr3:159523000-159523400	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr3:159523000-159523400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr3:159523000-159523400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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